View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_95 (Length: 309)
Name: NF6076_high_95
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_95 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 42912058 - 42911865
Alignment:
| Q |
13 |
aatatggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttctatttacatttacagtaacactatatattattacttgtgtcgcca |
112 |
Q |
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| T |
42912058 |
aatatggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttccatttacattgacagtaacactaaatatta---cttgtgtcgcca |
42911962 |
T |
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| Q |
113 |
tgtatttgactcctatgtcctatcctatcttcatgcctttgggttttattatgcaatcaaacagaataagacactcaacttaattctttatatattt |
209 |
Q |
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| T |
42911961 |
tgtatttgactcctatgtcctatcctatcttcatgcctttgggttttattatgcaatcaaacagaataagacactcaacttaattctttatatattt |
42911865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 42911832 - 42911746
Alignment:
| Q |
203 |
tatatttctagtttctagcaaatatatttccaatatagaataacgtagtaattgaagctacgaagctaaacatgtgtgtgcagtaggac |
291 |
Q |
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| T |
42911832 |
tatatttctagtttctagcaaatatatttccaatattgaataacgtaataattgatgctacgaagttaaac--gtgtgtgcagtaggac |
42911746 |
T |
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