View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_98 (Length: 308)
Name: NF6076_high_98
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_98 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 7906205 - 7905922
Alignment:
| Q |
20 |
gtgcttttgcttccggtgttgtttcgtgttgtgttggtgatgatgggtctgcttgggtttgggggatgtccaaaaggggacagcttggacttggaaaaca |
119 |
Q |
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| T |
7906205 |
gtgcttttgcttccggtgttgtttcgtgttgtgttggtgatgatgggtctgtttgggtttgggggatgtccaaaaggggacagcttggacttggaaaaca |
7906106 |
T |
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| Q |
120 |
tgttactgaagctgttgtgccttctagagttgaagcactttctcgacaaaacgtagttaaggtactttagcttaattaagctttctttttctacaaccat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
7906105 |
tgttactgaagctgttgtgccttctagagttgaagcactttctcgacaaaacgtagttaaggtactttagcttaattaagttttctttttctacaagcat |
7906006 |
T |
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| Q |
220 |
tgcataagttatgttacacgtgtccagcctaacaatatcaacattgtaagatcaagatgaaacatctccaatagtataatctac |
303 |
Q |
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| T |
7906005 |
tgcataagttatgttacacgtgtccagcctaacaatatcaacattgtaagatcaagatgagacatctccaatagtataagctac |
7905922 |
T |
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