View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_100 (Length: 305)
Name: NF6076_low_100
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 4361487 - 4361726
Alignment:
| Q |
49 |
atcaggtagttgggacaaggggttatgcagcaccagagtatattgaaacaggtcatttaaaatcaaagagtgacatttggagttttggtgtggtactata |
148 |
Q |
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| T |
4361487 |
atcaggtagttgggacaaggggttatgcagcaccagagtatattgaaacaggtcatttaaaatcaaagagtgacatttggagttttggtgtggtactata |
4361586 |
T |
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| Q |
149 |
tgagattctcacaggaagaagaacaattgaaagaacccttccaaaagtggaacaaaagcttatagaatgggttaaaaactaccctgctgacagtagcaga |
248 |
Q |
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| T |
4361587 |
tgagattctcacaggaagaagaacaattgaaagaacccttccaaaagtggaacaaaagcttatagaatgggttaaaaactaccctgctgacagtagcaga |
4361686 |
T |
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| Q |
249 |
ttcagcttaataatagaccctcgactcagggagcaatatt |
288 |
Q |
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| T |
4361687 |
ttcagcttaataatagaccctcgactcaggaagcaatatt |
4361726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 287
Target Start/End: Complemental strand, 41050424 - 41050209
Alignment:
| Q |
72 |
tatgcagcaccagagtatattgaaacaggtcatttaaaa-tcaaagagtgacatttggagttttggtgtggtactatatgagattctcacaggaagaaga |
170 |
Q |
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| T |
41050424 |
tatgctgcgccagagtacatcgaaacaggtcatctcaaagtccaa-agtgacatgtggagtttcggtgtcgtactctacgaaattctcacgggaagacga |
41050326 |
T |
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| Q |
171 |
acaattgaaagaacccttccaaaagtggaacaaaagcttatagaatgggttaaaaactaccctgctgacagtagcagattcagcttaataatagaccctc |
270 |
Q |
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| T |
41050325 |
tcattggaaaggaaccgtccgacaactgaacaaaagctattagattgggttaaacaatatcctgctgacactagcagattcagcatgataatggacccgc |
41050226 |
T |
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| Q |
271 |
gactcagggagcaatat |
287 |
Q |
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| T |
41050225 |
gtctcaggaaccaatat |
41050209 |
T |
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