View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_101 (Length: 300)

Name: NF6076_low_101
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_101
NF6076_low_101
[»] chr1 (12 HSPs)
chr1 (2-292)||(20475103-20475393)
chr1 (2-285)||(19141130-19141410)
chr1 (2-278)||(13647628-13647904)
chr1 (2-292)||(20366031-20366321)
chr1 (2-282)||(13608148-13608425)
chr1 (2-292)||(13682240-13682530)
chr1 (2-280)||(13581885-13582163)
chr1 (2-282)||(13503568-13503854)
chr1 (2-280)||(13668153-13668431)
chr1 (2-278)||(15901478-15901748)
chr1 (1-278)||(13540809-13541080)
chr1 (12-278)||(16470691-16470957)
[»] chr6 (2 HSPs)
chr6 (2-278)||(22286383-22286659)
chr6 (4-278)||(21811854-21812122)
[»] scaffold0006 (3 HSPs)
scaffold0006 (2-282)||(136808-137085)
scaffold0006 (2-280)||(165767-166045)
scaffold0006 (2-278)||(52412-52688)
[»] scaffold0069 (1 HSPs)
scaffold0069 (12-292)||(24037-24317)
[»] chr2 (1 HSPs)
chr2 (1-280)||(38059974-38060253)
[»] scaffold0406 (1 HSPs)
scaffold0406 (12-292)||(10448-10728)
[»] scaffold1514 (2 HSPs)
scaffold1514 (110-292)||(405-587)
scaffold1514 (1-133)||(606-738)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-278)||(43380-43651)
[»] scaffold0012 (1 HSPs)
scaffold0012 (2-278)||(113366-113642)
[»] chr8 (1 HSPs)
chr8 (2-278)||(20817001-20817277)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 20475393 - 20475103
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  20475393 ggagatggcaaaatcacgaacaaagtcatgcatttgaatatttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatttgattattgtg 20475294  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| ||||||    
T  20475293 taaagtctgtttcttgcatcatccatggcattaatatgcttcaataagtccaaccccattgcaactttgagatagtactctatagactcacctagcatta 20475194  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20475193 atgcaaaaagcaagaagagatccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc 20475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 19141130 - 19141410
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19141130 ggagatagcaaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatttgattattgtg 19141229  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||   | ||||  || ||    
T  19141230 taaagtctgtttcttgcatcatccatggcattaatatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctgccagta 19141326  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggt 285  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  19141327 atgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactgagttccaaagcagaataagttcccgggt 19141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 13647904 - 13647628
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||    
T  13647904 ggagatagcaaaatcacgaacaaagtcatgcatttgaatccttccacctgttttaacttcaagcaaaagacaagtcgccttcaaagatttgattattgtg 13647805  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||  ||||||| ||| ||    
T  13647804 taaagtctgtttcttgcatcatcaatggcattaatatgcttcaatatgtccaatcccattgcaactttgagaaagtactctatatcattacctagcagta 13647705  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    ||||||||| |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13647704 atgcaaaaagcaagaagagatctttcatttcatcactctccaaagagttgtaactcaattccaaagcagaataagtt 13647628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 20366321 - 20366031
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||    
T  20366321 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtg 20366222  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||  ||||||||||||||||||||||||||  || |||| ||||||    
T  20366221 taaagtctgtttcttgcatcatctatggcattaacatgcttcaatatgtccaacccctttgcaactttgagaaagtactctatatcatcacctagcatta 20366122  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20366121 atgcaaaaagcaagaagagatccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc 20366031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 13608425 - 13608148
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||    
T  13608425 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtg 13608326  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||   | ||||  || ||    
T  13608325 taaagtctatttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctgccagta 13608229  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg 282  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13608228 atgcaaaaagcaagaagagagccctcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg 13608148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 13682530 - 13682240
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||    
T  13682530 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttccaactgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattctg 13682431  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    | | || | | ||    
T  13682430 taaagtctgtttcttgcatcatctatggcattaagatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatttgttcatctaggaata 13682331  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13682330 atgcaaaaagcaagaagagagccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc 13682240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 13582163 - 13581885
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || ||||||| |||||||||||||||||| || ||||   |||||||||||||||||||||||||  |||| ||||||||| | ||||||| |    
T  13582163 ggagatagcaaaatcacaaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagattttattattgag 13582064  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||    
T  13582063 taaagtctgtttcttgcatcatccatggctttaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatatcattacctagcatta 13581964  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 280  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13581963 atgcaaaaagcaagaagagatccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 13581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 13503854 - 13503568
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||    
T  13503854 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtg 13503755  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaatt------acctc 195  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||  |||      ||||     
T  13503754 taaagtctgtttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatatcattatcatcaccta 13503655  T
Q  196 gcattaatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg 282  Q
    ||| ||||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13503654 gcagtaatgcaaaaagcaagaagagatccttcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg 13503568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 13668431 - 13668153
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || ||||   |||||||||||||||||||||||||  |||| ||||||||| | ||||||| |    
T  13668431 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagatttgattattgag 13668332  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||     | || |  || ||    
T  13668331 taaagtctgtttcttgcataatctatggcattaacatgcttcaatatgtccaaccctattgcaactttgagaaagtactctacgttttcacgtaacagta 13668232  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 280  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13668231 atgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 13668153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 15901478 - 15901748
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||| ||||||||| | |||||||||    
T  15901478 ggagatagcaaaatcacgaacaaagtcatgcatttggatctttgcatctgttttaacttcaagcagaagacaagtcgcctccaaagatttgattattgtg 15901577  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||| | |||||||||||||| |  |      |||||||||||| ||| || || |||||||||| ||||||||| || |||  ||||||| ||| |     
T  15901578 taaagtttgtttcttgcatcatccactg------tatgcttcaatatgtctaatcccattgcaacttggagaaagtattcgatatcattacctggcagtg 15901671  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    |||||||||  |||||||||||||||||||||||||| | ||||||| |||| || |||||||||||||||||||||    
T  15901672 atgcaaaaagtaagaagagagccctcatttcatcactttgcaatgagctgtagcttaattccaaagcagaataagtt 15901748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13541080 - 13540809
Alignment:
Q  1 cggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgt 100  Q
    ||||||| || ||||||||||||||||||||||| || |||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||||||||    
T  13541080 cggagatagcaaaatcacgaacaaagtcatgcatatggatctttgcatctgttttaacttcatgcaaaagacaagtcgcctccaaagatttgattattgt 13540981  T
Q  101 gtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatt 200  Q
    |   ||| | |||||||| ||||| | ||      |||||||||||| ||| ||||| |||||||||| |||||||||||| | |  ||| |||  || |    
T  13540980 gactagtttgtttcttgcgtcatccacgg------tatgcttcaatatgtctaaccccattgcaacttggagaaagtactccacatcattgcctgacagt 13540887  T
Q  201 aatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
     |||||||||  |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  13540886 gatgcaaaaagtaagaagagagccctcatttcatcactctgcaatgaattgtaacttaattccaaagcagaataagtt 13540809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 16470691 - 16470957
Alignment:
Q  12 aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat 111  Q
    |||| ||||||||| ||||||||||| ||   || || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| | |    
T  16470691 aaattacgaacaaaatcatgcatttggatacatctacttgttttaacttcaagcaaaagacaagtcgcctccaaagatttgattattgtgtaaagtttgt 16470790  T
Q  112 ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat 211  Q
    ||||||||||||| |||| |||||||||||| || | |||||| || | ||||||||| ||||  ||||||||    ||   | ||| |||||||||||     
T  16470791 ttcttgcatcatccatggtattaatatgctttaaaatgtccaaacctactgcaactttcagaacatactctatctctttgattggcagtaatgcaaaaag 16470890  T
Q  212 caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    |||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  16470891 caagaagagatccctcgtttcattactctccaatgcgttgtaactcaattccaaagcagaattagtt 16470957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 22286383 - 22286659
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||    
T  22286383 ggagatagcaaaatcacgaacaaagtcatgcatttgaatccttccacctgttttaacttcaagcaaaagacaagtcgccttcaaagatttgattattgtg 22286482  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||  ||||||| ||| ||    
T  22286483 taaagtctgtttcttgcatcatcaatggcattaatatgcttcaatatgtccaaacccattgcaactttgagaaagtactctatatcattacctagcagta 22286582  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    ||||||||| |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22286583 atgcaaaaagcaagaagagatctttcatttcatcactctccaaagagttgtaactcaattccaaagcagaataagtt 22286659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 21812122 - 21811854
Alignment:
Q  4 agatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgta 103  Q
    |||| |||||||| ||||| |||||||||||||| |||||||| | | |||||||  |||||||||||||||| || |||||||||   |||| | | ||    
T  21812122 agatagcgaaatctcgaaccaagtcatgcatttggatctttcccctttttttaacaccaagcaaaagacaagttgcctccaaagattcgattactctata 21812023  T
Q  104 aagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaat 203  Q
    |||| |  ||||||||||||||||||      |||| || |||| |||||| || ||||||||| | ||| ||||||||| |  | || || ||| ||||    
T  21812022 aagtatgattcttgcatcatcaatgg------tatgatttaatatgtccaaacccattgcaactctcagagagtactctacaacagtatctggcagtaat 21811929  T
Q  204 gcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21811928 gcaaaaagcaagaagagatcccttatttcatcactctccaatgagttgtaactcaattcaaaagcagaataagtt 21811854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 137085 - 136808
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||    
T  137085 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtg 136986  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||   | ||||  || ||    
T  136985 taaagtctatttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctata---tcacctgccagta 136889  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccg 282  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  136888 atgcaaaaagcaagaagagagccctcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagttcccg 136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 166045 - 165767
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || |||||||||||||||||||||||||| || ||||   |||||||||||||||||||||||||  |||| ||||||||| | ||||||| |    
T  166045 ggagatagcaaaatcacgaacaaagtcatgcatttggatatttctgtctgttttaacttcaagcaaaagacatctcgcctccaaagatttgattattgag 165946  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||     | || |  || ||    
T  165945 taaagtctgtttcttgcataatctatggcattaacatgcttcaatatgtccaaccctattgcaactttgagaaagtactctacgttttcacgtaacagta 165846  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 280  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165845 atgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 52688 - 52412
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || || |||| |||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||  || ||||| |||   || ||||||    
T  52688 ggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagatgcctccaatgattcgatcattgtg 52589  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    ||||||||||||||||||||||||| || ||||| ||| || |||| ||| |  || ||||||||||| |||||||||  || |  ||||||| | | ||    
T  52588 taaagtctatttcttgcatcatcaacggtattaacatgttttaatatgtctagacccattgcaactttcagaaagtacaatacatcattacctggaagta 52489  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    | | ||||| |||||| ||  |||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  52488 aagaaaaaagcaagaaaaggtccctcatttcatcactatccaatgagtcataactcaattctaaagcagaataagtt 52412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 24317 - 24037
Alignment:
Q  12 aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat 111  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||| |    
T  24317 aaatcacgaacaaagtcatgcatttggatctttccgtctgttttaacttcaagcaaaagacaagccgcctccaaagatttgattattgtgtaaagtctgt 24218  T
Q  112 ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat 211  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    | | || | | |||||||||||     
T  24217 ttcttgcatcatctatggcattaacatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatttgttcatctaggaataatgcaaaaag 24118  T
Q  212 caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24117 caagaagagagccctcatatcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc 24037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 38059974 - 38060253
Alignment:
Q  1 cggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgt 100  Q
    ||||||| || ||||||||||||||||| |||||||| || |||||  |||||||||||||||||||||||||  | || ||||||||| | ||||||||    
T  38059974 cggagatagcaaaatcacgaacaaagtcgtgcatttggatatttccgtctgttttaacttcaagcaaaagacatcttgcctccaaagatttgattattgt 38060073  T
Q  101 gtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatt 200  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    | ||||  |  |    
T  38060074 gtaaagtctgtttcttgcatcatccatgacattaatatgcttcaatatgtccaaccccattgcaactttcagaaagtactctatgttttcacctatcggt 38060173  T
Q  201 aatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 280  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38060174 aatgcaaaaagcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcc 38060253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 10448 - 10728
Alignment:
Q  12 aaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtgtaaagtctat 111  Q
    ||||||||||||| |||||||||||| || |||||  |||||||||||||||||||||||||  |||| ||||||||| | ||||||||||||||||| |    
T  10448 aaatcacgaacaatgtcatgcatttggatatttccgtctgttttaacttcaagcaaaagacatttcgcctccaaagatttgattattgtgtaaagtctgt 10547  T
Q  112 ttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaaat 211  Q
    |||||||||| || || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||   | ||||  || |||||||||||     
T  10548 ttcttgcatcgtccattgcattaatatgcttcaatatgtccaaccccattgcaactttgagaaagtactctatattttgacctaacagtaatgcaaaaag 10647  T
Q  212 caagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
     ||||||||| ||||||||||||||||||| ||  ||| ||||||||||||||||||| ||| |||| || ||| ||||||    
T  10648 aaagaagagatccctcatttcatcactctctaagaagtagtaactcaattccaaagcaaaattagttgcccggtccatctc 10728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1514 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold1514
Description:

Target: scaffold1514; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 587 - 405
Alignment:
Q  110 atttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcattaatgcaaaa 209  Q
    ||||||||||| ||| ||| |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| | || | ||||||||||||||    
T  587 atttcttgcattatctatgacattaatatgcttcaatatgtccaaccccattgaaactttgagaaagtactctatagactcacatagcattaatgcaaaa 488  T
Q  210 atcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggttcatctc 292  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  487 agcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagttcccgggtccatctc 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1514; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 738 - 606
Alignment:
Q  1 cggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgt 100  Q
    ||||||| || |||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||  |||| ||||||||| | ||||||||    
T  738 cggagatagcaaaatcacgaacaaagtcatgcatttggataattccatctgttttaacttcaagcaaaagacatctcgcctccaaagatttgattattgt 639  T
Q  101 gtaaagtctatttcttgcatcatcaatggcatt 133  Q
     |||||||| |||||||||||||| ||| ||||    
T  638 ataaagtctgtttcttgcatcatcgatgacatt 606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43380 - 43651
Alignment:
Q  1 cggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgt 100  Q
    ||||||| || ||||||||||||||||||||||| || |||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||||||||    
T  43380 cggagatagcaaaatcacgaacaaagtcatgcatatggatctttgcatctgttttaacttcatgcaaaagacaagtcgcctccaaagatttgattattgt 43479  T
Q  101 gtaaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatt 200  Q
    |   ||| | |||||||| ||||| | ||      |||||||||||| ||| ||||| |||||||||| |||||||||||| | |  ||| |||  || |    
T  43480 gactagtttgtttcttgcgtcatccacgg------tatgcttcaatatgtctaaccccattgcaacttggagaaagtactccacatcattgcctgacagt 43573  T
Q  201 aatgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
     |||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  43574 gatgcaaaaagtaagaagagagccctcatttcatcactctgcaatgagttgtaacttaattccaaagcagaataagtt 43651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 113642 - 113366
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || || |||| |||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||  || |||||||||   || ||||||    
T  113642 ggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagatgcctccaaagattcgatcattgtg 113543  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||||||||||||||||||||||    ||||| ||| || |||| |||||  || ||||||||||| |||||||||  || |  ||||||| | | ||    
T  113542 taaagtctatttcttgcatcatcaacaatattaacatgttttaatatgtccagacccattgcaactttcagaaagtacgatacatcattacctggaagta 113443  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    ||| ||||| |||||||||  |||||||||||||||| ||||||||||  || ||||||||||||||||||||||||    
T  113442 atgaaaaaagcaagaagaggtccctcatttcatcactatccaatgagtcatagctcaattccaaagcagaataagtt 113366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 20817001 - 20817277
Alignment:
Q  2 ggagatggcgaaatcacgaacaaagtcatgcatttgaatctttccacctgttttaacttcaagcaaaagacaagtcgcttccaaagatctaattattgtg 101  Q
    |||||| || || |||| |||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||| || |||||||||   || ||||||    
T  20817001 ggagatagcaaactcacaaacaaagtcatgcatttggatctttccatctactttaacttcaagcaaaagacaagttgcctccaaagattcgatcattgtg 20817100  T
Q  102 taaagtctatttcttgcatcatcaatggcattaatatgcttcaataagtccaacccaattgcaactttgagaaagtactctatagaattacctcgcatta 201  Q
    |||||| |||||||||||||||||| || ||||| ||| || |||| ||| |  || ||||||| ||| |||||||||  || | |||||||| | | ||    
T  20817101 taaagtttatttcttgcatcatcaaaggtattaacatgttttaatatgtctagacccattgcaatttttagaaagtacgatacataattacctggaagta 20817200  T
Q  202 atgcaaaaatcaagaagagagccctcatttcatcactctccaatgagttgtaactcaattccaaagcagaataagtt 278  Q
    | | ||||| |||||| ||  |||||||||||||||| ||||||||||  || ||||||||||||||||||||||||    
T  20817201 aagaaaaaagcaagaaaaggtccctcatttcatcactatccaatgagtcatagctcaattccaaagcagaataagtt 20817277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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