View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_104 (Length: 284)
Name: NF6076_low_104
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_104 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 21101697 - 21101978
Alignment:
| Q |
8 |
tagcataggactttacatccaataattaacaacattaagattaacattggaagactaacataaacaacttaatgacattataaaaataaatataaaaacc |
107 |
Q |
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| T |
21101697 |
tagcataggactttacatccaataattaacaacattaagactaacattggaagactaacataaacaacttaatgacattataaaaataaatataaaaacc |
21101796 |
T |
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| Q |
108 |
cactaaacacaaagattaaagacatttattgagttcgacctattgattaaa-----nnnnnnnnnctctttcattttggatgcccaactcaaatttcaac |
202 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
21101797 |
cactaaacacaaagattaaagacatttattgagtttgacctattgattaaattcgttttttttttttttttcattttggatgcccaactcaaatttcaac |
21101896 |
T |
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| Q |
203 |
tcaaggttttccttcttggttgtttccaactcttcttgaagtaattgaacattatagtagttgaagtccctaattgtatgtc |
284 |
Q |
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| T |
21101897 |
tcaaggttttccttcttggtggtttccaactcttcttgaagtaattcaacattatagtagttgaagtccctaattgtatgtc |
21101978 |
T |
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