View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_105 (Length: 283)

Name: NF6076_low_105
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_105
NF6076_low_105
[»] chr3 (1 HSPs)
chr3 (1-283)||(52050022-52050299)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 52050299 - 52050022
Alignment:
Q  1 atgtaatctccaggggtgcgattggatattcaagaaaactatgtaatccacttcttttaagtatatgttttattatttttatttaaaagtgatcttttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52050299 atgtaatctccaggggtgcgattggatattcaagaaaactatgtaatccacttcttttaagtatatgttttattatttttatttaaaagtgatcttttag 52050200  T
Q  101 gatgacatttaatttctaaggcaatgaacttagaataaaatatgttgtatannnnnnnngttctgtttaggtggtaattgataatgacatagtacaagtc 200  Q
    ||| ||     ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  52050199 gataac-----atttctaaggcaatgaacttagaataaaatatgttgtatattttttttgttctgtttaggtggtaattgataatgacatagtacaagtc 52050105  T
Q  201 aatatatcaaacccagaaggatgtgttactggaattcaatataatggactcgataatttgctcgaaattattaaccacgaatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52050104 aatatatcaaacccagaaggatgtgttactggaattcaatataatggactcgataatttgctcgaaattaataaccacgaatc 52050022  T

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