View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_106 (Length: 281)
Name: NF6076_low_106
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_106 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4400015 - 4399747
Alignment:
| Q |
1 |
tcaaatattgattatatattattgtccatgcatggaagaacatgaactcatagcaacaactccaagtttctgaagattaagcttgacaacagtgtcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4400015 |
tcaaatattgattatatattattgtccatgcatggaagaacatgaactcatagcaacaactccaagtttctgaagattaagcttgacaacagtgtcaaca |
4399916 |
T |
|
| Q |
101 |
aacatcttggtatcttcttcagtgttcccatgtggaatatcaacaatataagattccaaaacaatagtataaaccttaccttcattgttgacaaactcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4399915 |
aacatcttggtatcttcttcagtgttcccatgtggaatatcaacaatataagattccaaaacaatagtataaaccttaccttcattgttgacaaactcat |
4399816 |
T |
|
| Q |
201 |
taaccgaagtaactgaacgatagttttgaagacgatgttcaccaccaacaactctaaaacttattacat |
269 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4399815 |
taaccgaagtaaccgaacgatagttttgaagacgatgttcaccaccaacaactctaaaacttattacat |
4399747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University