View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_107 (Length: 279)
Name: NF6076_low_107
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 32689159 - 32688908
Alignment:
| Q |
19 |
cacagacatagagaagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaaga--------caaaca |
110 |
Q |
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| T |
32689159 |
cacaaacatagagaagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaagagtcgaagacaaaca |
32689060 |
T |
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| Q |
111 |
tttccagaattcgacaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaatagg |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689059 |
tttccagaattcaacaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaatagg |
32688960 |
T |
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| Q |
211 |
taagtaggtggggtttaaatagagagaattttatattcttcagttagtgatg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688959 |
taagtaggtggggtttaaatagagagaattttatattcttcagttagtgatg |
32688908 |
T |
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