View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_109 (Length: 279)
Name: NF6076_low_109
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_109 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 10464996 - 10464727
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcattaaatttagctctgtagttgatgacgctagaaagtagatttttga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10464996 |
agagaaaattgtcacaaaaattttcattgatgaatgttcaaatatcatttttcattaaatttagctctgtagttgatgacgctagaaagtagatttttga |
10464897 |
T |
|
| Q |
101 |
ggtgtcttcatatgcttaaaccagggatggcatgatctacggtatcagcgatccatagtctcattgttgatgtctattagccctcttggttaggttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10464896 |
ggtgtcttcatatgcttaaaccagggatggcatgatctacggtatcagcgatccatagtctcattgttcatgtctattagccctcttggttaggttgaca |
10464797 |
T |
|
| Q |
201 |
cgtggacagaagaggacagcaagttaattggtcaatttacatggctgcattatgtgttttttagaataat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10464796 |
cgtggacagaagaggacagcaagttaattggtcaatttacatggctgcattatgtgttttttagaataat |
10464727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3343348 - 3343398
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt |
50 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3343348 |
agagaaaattgtcacaaaaattgtcataaaatgaatgttcaaatatcattt |
3343398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31844623 - 31844672
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt |
50 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
31844623 |
agagaaaattgtcataaaaattgtcacaaatggatgttcaaatatcattt |
31844672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32912091 - 32912026
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttttcattaaatttagc |
65 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||| || |||||| |||| |
|
|
| T |
32912091 |
agagaaaattgtcacaaaaattatcataaaatgaatgttcaaatatcatttctctttaaatatagc |
32912026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19840004 - 19840054
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt |
50 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19840004 |
agagaaagttgtcacaaaaattgtcataaaatgaatgttcaaatatcattt |
19840054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5864256 - 5864206
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt |
50 |
Q |
| |
|
|||||||||||| ||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
5864256 |
agagaaaattgttacaaaaattatcactagatgaatgttcaaatatcattt |
5864206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2689082 - 2689132
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt |
50 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
2689082 |
agagaaagttgtcacaaaaattgtcattaaatggatgttcaaatatcattt |
2689132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50050690 - 50050641
Alignment:
| Q |
1 |
agagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt |
50 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
50050690 |
agagaaaattgtcacaaaaattgtcaaaaataattgttcaaatatcattt |
50050641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University