View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_11 (Length: 567)
Name: NF6076_low_11
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 188 - 552
Target Start/End: Complemental strand, 33861449 - 33861076
Alignment:
| Q |
188 |
ataatgaaaatagagagtgtgttgatatacccccactttccttagaattcttgccttgctagttatagtacatttgattgggtcacatataattcttgct |
287 |
Q |
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| T |
33861449 |
ataatgaaaatagagagtgtgttgatatacccccactttccttagaattcttgccttgctagttagaatacatttgactgggtcacatataattcttgct |
33861350 |
T |
|
| Q |
288 |
accctaatttccttgtacattatcaaagttcgaaacagatttgattgctttctttgttatgatggtgatttatatgtataattatctaaatgatcatgag |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33861349 |
accctaatttccttgtacattatcaaagttcgaaacagatttgattgctttctttgttatgatggtgatttatatgtataaatatctaaatgatcatgag |
33861250 |
T |
|
| Q |
388 |
aattggagattgaacataatagccttcattt------------atttcgaaatactttattccatttcaagactacatcagtgaactaatgcagagacat |
475 |
Q |
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| T |
33861249 |
aattggagattgaacataatagccttcatttatttattaatttatttcgaaatact---ttccatttcaagactacatcagtgaactaatgcagagacat |
33861153 |
T |
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| Q |
476 |
aactcatgttgccaaggtggttttctcacaaccatcgtgcacacatgctaagacatctctatagtccctggaaattg |
552 |
Q |
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| T |
33861152 |
aactcatgttgccaaggtggttttctcacaaccatcgtgcacacaggccaagacatctctatagtccctggaaattg |
33861076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 33861549 - 33861447
Alignment:
| Q |
14 |
atatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33861549 |
atatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttttatc |
33861450 |
T |
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| Q |
114 |
ata |
116 |
Q |
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||| |
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| T |
33861449 |
ata |
33861447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 425 - 552
Target Start/End: Complemental strand, 33871540 - 33871413
Alignment:
| Q |
425 |
aaatactttattccatttcaagactacatcagtgaactaatgcagag-acataactcatgttgccaaggtggttttctcacaaccatcgtgcacacatgc |
523 |
Q |
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| T |
33871540 |
aaatattttatttcatttcaagactacatcaa-gttctaatgtagactacataattcagagtgccaaggtggttttctcacaaccatcgtgcacacaggc |
33871442 |
T |
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| Q |
524 |
taagacatctctatagtccctggaaattg |
552 |
Q |
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| T |
33871441 |
caagacatctctatagtccctggaaattg |
33871413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 550
Target Start/End: Complemental strand, 33876035 - 33875957
Alignment:
| Q |
472 |
acataactcatgttgccaaggtggttttctcacaaccatcgtgcacacatgctaagacatctctatagtccctggaaat |
550 |
Q |
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| T |
33876035 |
acataactcaggttggcaaggtggttttcacacaaccatcgtgcacacaggccaagacatctctatagtccctggaaat |
33875957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 7533766 - 7533679
Alignment:
| Q |
25 |
attagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctat |
112 |
Q |
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|||| ||| |||||||||||||||| |||||||||||| |||||| | |||||||||| ||||| | |||||||||| ||||||||| |
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| T |
7533766 |
attatacactataaaaagagtttattttaatcttattttccaaaaatcttttatcataatatatttaaaaattgatacctctttctat |
7533679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 9244869 - 9244937
Alignment:
| Q |
22 |
aatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgt |
90 |
Q |
| |
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|||||| |||| |||||||||| |||| ||||||| |||||| |||| ||||| |||||||||||||| |
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| T |
9244869 |
aatattggacactataaaaagatattattttaatctgatttactaaaactatttgatcatagtatatgt |
9244937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 33478487 - 33478570
Alignment:
| Q |
13 |
aatatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaat |
96 |
Q |
| |
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| T |
33478487 |
aataggaacaatattatacactatataatgaatttattttaatcctatttgccaaaaatactttatcataatatatgttaaaat |
33478570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 32526983 - 32527044
Alignment:
| Q |
51 |
ttaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctat |
112 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||| |||||||| |||| ||||||| |
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| T |
32526983 |
ttaatcttatttgtcaaaaacatttaatcatagtatatgtcaaaattgaaatatatttctat |
32527044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 50798446 - 50798486
Alignment:
| Q |
72 |
attttatcatagtatatgttaaaattgatatatctttctat |
112 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| |
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| T |
50798446 |
attttatcatcatatatgttaaaattgatatctctttctat |
50798486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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