View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_110 (Length: 277)
Name: NF6076_low_110
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_110 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 277
Target Start/End: Original strand, 4878078 - 4878350
Alignment:
| Q |
5 |
tgtcgaagaatatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaa |
104 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878078 |
tgtcgaatactatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaa |
4878177 |
T |
|
| Q |
105 |
attggaatgtattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagata |
204 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878178 |
attggaatggattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagata |
4878277 |
T |
|
| Q |
205 |
gtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878278 |
gtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactg |
4878350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University