View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_117 (Length: 271)

Name: NF6076_low_117
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_117
NF6076_low_117
[»] chr1 (3 HSPs)
chr1 (24-255)||(17302276-17302506)
chr1 (50-202)||(15504202-15504354)
chr1 (55-202)||(2260079-2260226)
[»] chr4 (5 HSPs)
chr4 (50-202)||(11345996-11346148)
chr4 (56-200)||(47491998-47492142)
chr4 (56-187)||(51305258-51305388)
chr4 (55-199)||(34113279-34113423)
chr4 (78-163)||(43901842-43901926)
[»] chr7 (2 HSPs)
chr7 (48-135)||(44701546-44701633)
chr7 (56-142)||(19562115-19562202)
[»] chr6 (1 HSPs)
chr6 (57-198)||(6725944-6726085)
[»] chr5 (2 HSPs)
chr5 (55-202)||(11429783-11429933)
chr5 (49-107)||(3003711-3003769)
[»] chr8 (1 HSPs)
chr8 (48-142)||(10517595-10517689)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 17302276 - 17302506
Alignment:
Q  24 ttatagtcccaatgtcacatttctttagtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagc 123  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17302276 ttatagtcccaatgtcacatttctt-agtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagcttgacgtggaaattctaaagc 17302374  T
Q  124 tacaaaagcaagcttttgtgtaaacgtgaaaattcaccgtgattctacataaaccaccactaaaccaaacgagcactaatttggacgcaagtgttaatac 223  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17302375 tacaaaagcaagcttttgtgtaaacgtgaaaattcactgtgattctacagaaaccaccgctaaaccaaacgagcactaatttggacgcaagtgttaatac 17302474  T
Q  224 cctcctacgaactcgattggtattcgagtttg 255  Q
    ||||||||||||||||||||||||||||||||    
T  17302475 cctcctacgaactcgattggtattcgagtttg 17302506  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 15504202 - 15504354
Alignment:
Q  50 agtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacg 149  Q
    |||| |||||||||||||||||| || |||||||||||| |  || || ||||||||||||||||| || |||||||||||| ||||||||||| |||||    
T  15504202 agtatgtgtttggattagcttttacagtgcaaatatcacgtttcgaggtaagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacg 15504301  T
Q  150 tgaaaattcaccgtgattctacataaaccaccactaaaccaaacgagcactaa 202  Q
    ||||||| |||||||||| |  |  ||||||| ||||||||||||||||||||    
T  15504302 tgaaaatccaccgtgattttctagtaaccaccgctaaaccaaacgagcactaa 15504354  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 2260226 - 2260079
Alignment:
Q  55 gtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaa 154  Q
    |||||||  ||||||||||||| ||||| ||||| | ||| || ||| |||||||| ||||  | ||||||||||| ||| ||||| || |||| | |||    
T  2260226 gtgtttgagttagcttttgcaacgcaaagatcacgttccgaggtaagttggacgtgaaaatcttgaagctacaaaaacaaacttttatgaaaacataaaa 2260127  T
Q  155 attcaccgtgattctacataaaccaccactaaaccaaacgagcactaa 202  Q
    || |||||| |||||  | ||||||||  |||||||||| ||||||||    
T  2260126 atccaccgtaattctctagaaaccaccgataaaccaaaccagcactaa 2260079  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 11346148 - 11345996
Alignment:
Q  50 agtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacg 149  Q
    |||| ||||||||||||||||||||||  |||||||||  | ||| |||||||| |||||| |||| || |||||||||||||||| ||||||  ||||     
T  11346148 agtatgtgtttggattagcttttgcaagacaaatatcatgttccgaggcaagctagacgtgaaaatcctgaagctacaaaagcaaggttttgtagaaaca 11346049  T
Q  150 tgaaaattcaccgtgattctacataaaccaccactaaaccaaacgagcactaa 202  Q
    || ||| | ||||||||| || | |||||||| | ||||||||||| ||||||    
T  11346048 tggaaacttaccgtgattttataaaaaccaccgccaaaccaaacgaacactaa 11345996  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 47491998 - 47492142
Alignment:
Q  56 tgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaaa 155  Q
    ||||||||||| ||||||||  ||||||||||| ||  | |||||||||||| ||||||| || ||| |||||||| ||| ||||||| |||||||||||    
T  47491998 tgtttggattaacttttgcagggcaaatatcacgtctagaggcaagctggacatggaaatcctgaagttacaaaagtaagattttgtgaaaacgtgaaaa 47492097  T
Q  156 ttcaccgtgattctacataaaccaccactaaaccaaacgagcact 200  Q
    | |||||| |||||  | ||||||||  |||||||||| ||||||    
T  47492098 tccaccgtaattctttaaaaaccaccgttaaaccaaacaagcact 47492142  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 51305388 - 51305258
Alignment:
Q  56 tgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaaa 155  Q
    |||||||||||||||||||| || ||||||||| ||||| |||||| |||| ||| ||||||| || ||| |||| |||| ||||||| |||| ||||||    
T  51305388 tgtttggattagcttttgcagtgaaaatatcacgtcccgaggcaagttggatgtgaaaattctcaaacta-aaaaacaagtttttgtgaaaacatgaaaa 51305290  T
Q  156 ttcaccgtgattctacataaaccaccactaaa 187  Q
    ||||||||||||||  | |||||||| |||||    
T  51305289 ttcaccgtgattcttaaaaaaccaccgctaaa 51305258  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 34113279 - 34113423
Alignment:
Q  55 gtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaa 154  Q
    ||||||| ||||||||||||| ||| |||||||| ||||| |  || ||||| || |||||  | ||| |||||||| || |||||||| ||||||||||    
T  34113279 gtgtttgaattagcttttgcattgcgaatatcacgtcccgagataaactggatgtagaaatcttgaaggtacaaaagtaaacttttgtgaaaacgtgaaa 34113378  T
Q  155 attcaccgtgattctacataaaccaccactaaaccaaacgagcac 199  Q
    || ||||||||||||  | ||||||   |||||||||||||||||    
T  34113379 atccaccgtgattctctagaaaccattgctaaaccaaacgagcac 34113423  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 43901842 - 43901926
Alignment:
Q  78 gcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaaattcaccgt 163  Q
    ||||||||||| ||||  | |||| |||| |||||||| || |||||||||| ||||||||||||| |||||||||||| ||||||    
T  43901842 gcaaatatcacgtcccaagtcaagttggatgtggaaatcctgaagctacaaa-gcaagcttttgtgaaaacgtgaaaatccaccgt 43901926  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 44701633 - 44701546
Alignment:
Q  48 ttagtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaag 135  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||| |  ||||||||||||||||| |||||  ||||||||||||    
T  44701633 ttagtacgtgtttggattagcttttgcagtgtaaatatcacgtcccgagttaagctggacgtggaaatcctaaaagtacaaaagcaag 44701546  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 19562202 - 19562115
Alignment:
Q  56 tgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctac-aaaagcaagcttttgt 142  Q
    ||||||||||||||||||||  ||||||||||  ||||| | |||| | ||| || |||| |||||||||| ||||| ||||||||||    
T  19562202 tgtttggattagcttttgcatggcaaatatcatgtcccgagacaagttagacctgaaaatcctaaagctacaaaaagtaagcttttgt 19562115  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 6726085 - 6725944
Alignment:
Q  57 gtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaaat 156  Q
    |||||||||||||||||||  | |||| |||||||||| ||||||  |||| ||||||| ||  || || ||| ||||| ||||||| ||||||||||||    
T  6726085 gtttggattagcttttgcaccgtaaatctcacatcccgaggcaagtaggacttggaaatcctggagttataaacgcaagtttttgtgaaaacgtgaaaat 6725986  T
Q  157 tcaccgtgattctacataaaccaccactaaaccaaacgagca 198  Q
     |||| |||||||| | |||||||| ||||| ||||| ||||    
T  6725985 ccaccatgattctatagaaaccaccgctaaatcaaaccagca 6725944  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 11429783 - 11429933
Alignment:
Q  55 gtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaa----gcaagcttttgtgtaaacgt 150  Q
    ||||||||| ||||||||||  || ||||||||| ||||| |||||| ||||||||| ||| || ||| |||||||    ||||| ||||||| ||||||    
T  11429783 gtgtttggaatagcttttgcggtgtaaatatcacgtcccgaggcaagttggacgtgg-aatcctgaagttacaaaagttcgcaagtttttgtgaaaacgt 11429881  T
Q  151 gaaaattcaccgtgattctacataaaccaccactaaaccaaacgagcactaa 202  Q
    ||||||  | | |||||||  | || ||||||||||||||||| ||||||||    
T  11429882 gaaaatctatcatgattctctagaatccaccactaaaccaaacaagcactaa 11429933  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3003769 - 3003711
Alignment:
Q  49 tagtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggac 107  Q
    ||||| ||||||||||||||||||||| || |||| |||| ||||| ||||||||||||    
T  3003769 tagtatgtgtttggattagcttttgcactggaaatttcacgtcccgaggcaagctggac 3003711  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 10517595 - 10517689
Alignment:
Q  48 ttagtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagctggacgtggaaattctaaagctacaaaagcaagcttttgt 142  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||| | || ||||| || ||  ||||  | |||||||||||| || |||||||    
T  10517595 ttagtatgtgtttggattaactttcgcaaggcaaatatcacatcctgaggtaagctagatgtaaaaatcttgaagctacaaaagtaaacttttgt 10517689  T

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