View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_120 (Length: 268)
Name: NF6076_low_120
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_120 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0028 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22077752 - 22078019
Alignment:
| Q |
1 |
ctcacagttgggaaagttgatagggtctgaagctgagaaagagtggttgtgtctggcaggtgtgaatatagcacctcagcagtttgaacattctcaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22077752 |
ctcacagttgggaaagttgatagggtctgaagctgagaaatagtggttgtgtctggcagctgtgaatatagtacctcagcagtttgaacattctcaacag |
22077851 |
T |
|
| Q |
101 |
gcagaaaatcatcctcctaatggaaaatatgacaattgtcatgatcattcatttctcatgacctcattttttactaattgaaataagacttctaatagta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
22077852 |
gcagaaaatcatccttctaatggaaaatatttcaattgtcatgatcattcattgctcatgacctctttttttactaattgaaataagacttctaatagga |
22077951 |
T |
|
| Q |
201 |
gagtacctcatttattgggaacaatgctttgatcttttcaattaaaccttcatcctccttgattgctt |
268 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22077952 |
gactacctcattttttgggaacaatgctttgatcttttcaattaaaccttcatcttccttgattgctt |
22078019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 123180 - 123243
Alignment:
| Q |
205 |
acctcatttattgggaacaatgctttgatcttttcaattaaaccttcatcctccttgattgctt |
268 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
123180 |
acctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgctt |
123243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 23696971 - 23697024
Alignment:
| Q |
215 |
ttgggaacaatgctttgatcttttcaattaaaccttcatcctccttgattgctt |
268 |
Q |
| |
|
||||||||||| | ||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23696971 |
ttgggaacaattatatgatcttctcaatcaaaccttcatcctccttgattgctt |
23697024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University