View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_126 (Length: 260)
Name: NF6076_low_126
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_126 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30274781 - 30274529
Alignment:
| Q |
1 |
caagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattg |
100 |
Q |
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| T |
30274781 |
caagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttattattg |
30274682 |
T |
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| Q |
101 |
agtttcactatgagagagttttgaaaacaacatgcttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274681 |
agtttcactatgagag--ttttgaaaacaacatgcttctcaatttctcatccattatctttattccttgaacagtttattatggatgtgcaattcctagt |
30274584 |
T |
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| Q |
201 |
ggaaattggaatgtatggaggatatttctccactgatcctttacttcttctcact |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274583 |
ggaaattggaatgtatggaggatatttctccactgatcctttacttcttctcact |
30274529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 46270507 - 46270591
Alignment:
| Q |
12 |
agataaatgcaacaacagaagagcatgttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttatt |
96 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||| |||| |||||||| |
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| T |
46270507 |
agatcaatgcaataacagaagagcatgtgagcttacaaactgatgaggccaaacaggtttttgatttccctaccttgtgtttatt |
46270591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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