View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_128 (Length: 257)
Name: NF6076_low_128
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 29225302 - 29225085
Alignment:
| Q |
9 |
gaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaactcct |
108 |
Q |
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| T |
29225302 |
gaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaactcct |
29225203 |
T |
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| Q |
109 |
atggattccacagctgcataataataatgaatgaactatgtaagtcaaatttgcaata----tattgtttaacaacaaatgttaatggctatatgcatga |
204 |
Q |
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| T |
29225202 |
atggattccacagctgcataataataatgaatgaactatgtaagtca---ttgcaatatatttattgtttaacaacaaatgttaatggctat----atga |
29225110 |
T |
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| Q |
205 |
tgcgtaggtagtaaggtaccataccagt |
232 |
Q |
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||||||| |||||||||||||||||| |
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| T |
29225109 |
tgcgtag---gtaaggtaccataccagt |
29225085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 29229957 - 29229837
Alignment:
| Q |
18 |
acgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaactcctatggattcc |
117 |
Q |
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| T |
29229957 |
acgcatttggttaatgcctcttgatctatataaattcacaacatcttgcctagatggtagattatttccaatcatcccatagcaaactcctatggattcc |
29229858 |
T |
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| Q |
118 |
acagctgcataataataatgaa |
139 |
Q |
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| T |
29229857 |
acagctgcat-ataataatgaa |
29229837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 29234735 - 29234609
Alignment:
| Q |
9 |
gaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaactcct |
108 |
Q |
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|||| |||||||||||| || |||||| |||| |||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
29234735 |
gaagtatatacgcatttagtcaatgccatttgacttatataaatccacaacttcttgccttgatggtagattattgccaagcattccatagcaaactcct |
29234636 |
T |
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| Q |
109 |
atggattccacagctgcataataataa |
135 |
Q |
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| T |
29234635 |
acggattgcacaactgcgtaacaataa |
29234609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 29240478 - 29240362
Alignment:
| Q |
9 |
gaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaactcct |
108 |
Q |
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|||| |||||||||||| || |||||| |||| |||||||| | |||||| ||||| ||||||||||||||||| |||| || |||||||||||||||| |
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| T |
29240478 |
gaagtatatacgcattttgtcaatgccatttgacttatataagtccacaacttcttgacttgatggtagattattgccaagcactccatagcaaactcct |
29240379 |
T |
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| Q |
109 |
atggattccacagctgc |
125 |
Q |
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| T |
29240378 |
acggattgcacaactgc |
29240362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 29250747 - 29250657
Alignment:
| Q |
14 |
atatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtagattatttccaatcattccatagcaaac |
104 |
Q |
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|||||||||||| | ||||||| ||||||||||||||| ||||| |||||| |||||||||||||||| |||| || |||||||||||| |
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| T |
29250747 |
atatacgcattttgccaatgccttttgatttatataaatctacaacttcttgctttgatggtagattattgccaagcactccatagcaaac |
29250657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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