View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_129 (Length: 256)
Name: NF6076_low_129
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_129 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 3194684 - 3194890
Alignment:
| Q |
15 |
gatatccagggtaaaacaaacagagtagagtatgcagtttaaaacgagcatttgtttttgttgtcacaaattctcagatgcacatagtatatatattgat |
114 |
Q |
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| T |
3194684 |
gatatccagggtaaaacaaacagagtagagtatgcagtttaaaacgagcatttgtttttgttgtcacaaattctcagatgcacatagtatatatattgat |
3194783 |
T |
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| Q |
115 |
cagttggtttgttcagaatttataattctcattcaccaaaaattgttaatcactattttcttaactgcttacaactcagtactctactagacatatatgc |
214 |
Q |
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| T |
3194784 |
cagttggtttgttcagaatttgtaattctcattcaccaaaaattgttaatcactattttcttaactgcttacaacttagtactctactagacatatatgc |
3194883 |
T |
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| Q |
215 |
atcaatt |
221 |
Q |
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||||||| |
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| T |
3194884 |
atcaatt |
3194890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 3210967 - 3211031
Alignment:
| Q |
192 |
agtactctactagacatatatgcatcaatttagtacaagtgcagatgacaatcatgtaccatcat |
256 |
Q |
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| T |
3210967 |
agtactctactagacatatatgcatcaatttagtacaagtgcagatgacaatcatgtaccatcat |
3211031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 3194990 - 3195026
Alignment:
| Q |
220 |
tttagtacaagtgcagatgacaatcatgtaccatcat |
256 |
Q |
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| T |
3194990 |
tttagtacaagtgcagatgacaatcatgtaccatcat |
3195026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 3205330 - 3205300
Alignment:
| Q |
226 |
acaagtgcagatgacaatcatgtaccatcat |
256 |
Q |
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| T |
3205330 |
acaagtgcagatgacaatcatgtaccatcat |
3205300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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