View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_130 (Length: 256)

Name: NF6076_low_130
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_130
NF6076_low_130
[»] chr2 (9 HSPs)
chr2 (1-239)||(3981748-3981986)
chr2 (13-107)||(19933906-19934000)
chr2 (19-128)||(22849494-22849603)
chr2 (7-105)||(29992081-29992179)
chr2 (32-105)||(26370460-26370533)
chr2 (19-104)||(33845670-33845755)
chr2 (35-105)||(27635142-27635212)
chr2 (172-233)||(6745327-6745388)
chr2 (12-105)||(26510069-26510162)
[»] chr4 (13 HSPs)
chr4 (1-239)||(45421459-45421697)
chr4 (77-209)||(38836666-38836798)
chr4 (16-106)||(21485578-21485668)
chr4 (37-99)||(40686969-40687031)
chr4 (11-105)||(17777864-17777958)
chr4 (36-105)||(13501549-13501618)
chr4 (32-105)||(32663692-32663765)
chr4 (19-104)||(48213496-48213581)
chr4 (37-99)||(47782999-47783061)
chr4 (9-86)||(4946661-4946738)
chr4 (19-108)||(54781842-54781931)
chr4 (59-99)||(25587932-25587972)
chr4 (150-178)||(38836640-38836668)
[»] chr1 (10 HSPs)
chr1 (1-237)||(47142543-47142779)
chr1 (33-104)||(42311951-42312022)
chr1 (32-105)||(20491502-20491575)
chr1 (37-101)||(28214282-28214346)
chr1 (13-104)||(22069835-22069926)
chr1 (37-99)||(26418784-26418846)
chr1 (37-99)||(32108434-32108496)
chr1 (1-106)||(16906737-16906842)
chr1 (50-99)||(18984744-18984793)
chr1 (55-108)||(35195349-35195402)
[»] chr5 (6 HSPs)
chr5 (34-234)||(14724054-14724245)
chr5 (13-104)||(20351210-20351301)
chr5 (12-105)||(25585920-25586013)
chr5 (33-104)||(5584027-5584098)
chr5 (67-99)||(11737994-11738026)
chr5 (50-98)||(19237666-19237714)
[»] chr3 (10 HSPs)
chr3 (33-108)||(634880-634955)
chr3 (13-104)||(17058790-17058881)
chr3 (7-105)||(5561669-5561767)
chr3 (19-128)||(13503290-13503399)
chr3 (34-105)||(44328387-44328458)
chr3 (37-100)||(29704657-29704720)
chr3 (37-99)||(32073603-32073665)
chr3 (62-107)||(22522606-22522651)
chr3 (16-105)||(43640499-43640588)
chr3 (10-75)||(52585599-52585664)
[»] scaffold0015 (1 HSPs)
scaffold0015 (172-233)||(52266-52327)
[»] chr7 (10 HSPs)
chr7 (19-128)||(21504985-21505094)
chr7 (39-99)||(664988-665048)
chr7 (37-99)||(19017024-19017086)
chr7 (13-99)||(7097392-7097478)
chr7 (33-107)||(24062594-24062667)
chr7 (37-99)||(29526836-29526898)
chr7 (50-99)||(2175096-2175145)
chr7 (10-98)||(13596975-13597063)
chr7 (10-98)||(22911230-22911318)
chr7 (50-98)||(48770112-48770160)
[»] chr6 (7 HSPs)
chr6 (19-128)||(24177680-24177789)
chr6 (10-104)||(7072568-7072662)
chr6 (7-105)||(35220198-35220296)
chr6 (58-107)||(5477361-5477410)
chr6 (37-99)||(15950808-15950870)
chr6 (10-98)||(5827630-5827718)
chr6 (10-98)||(15610166-15610254)
[»] chr8 (10 HSPs)
chr8 (7-105)||(4424630-4424728)
chr8 (36-105)||(10543963-10544032)
chr8 (19-128)||(13523129-13523238)
chr8 (19-128)||(13612664-13612773)
chr8 (10-98)||(8871829-8871917)
chr8 (38-99)||(3989530-3989591)
chr8 (10-98)||(17834351-17834439)
chr8 (58-102)||(25939034-25939078)
chr8 (34-106)||(33535499-33535571)
chr8 (50-102)||(44587649-44587701)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-128)||(203164-203273)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-104)||(11026-11111)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3981748 - 3981986
Alignment:
Q  1 ttaaccaggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3981748 ttaaccagaatctggaaactagctgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 3981847  T
Q  101 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagttgtcaacaactcttttcgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3981848 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgc 3981947  T
Q  201 gtcaagctcgaaatcaattggtccaagttgaagaagatg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3981948 gtcaagctcgaaatcaattggtccaagttgaagaagatg 3981986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 19933906 - 19934000
Alignment:
Q  13 tggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaa 107  Q
    ||||||||||  ||| ||| ||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||||    
T  19933906 tggaaactagccgataatgtggcagcctttgctaattcatgggcagcctcatttgcttgtctccgaacaaactctacactcgagttttcataaaa 19934000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 22849603 - 22849494
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||||  | | || |    
T  22849603 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaaga 22849504  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  22849503 gagttttaca 22849494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 29992179 - 29992081
Alignment:
Q  7 aggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| ||||||||||| |||  ||  |||| |||| ||||| | ||||||||||||||| ||||||||||| | |||||| |||| |||||||||||||    
T  29992179 aggagctggaaactagctgacaatagggccacctttgctaacttatgggcaacctcatttgcttgtctccgtacaaactcaacacaagagttttcataa 29992081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 26370533 - 26370460
Alignment:
Q  32 aggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| ||||||||||||| ||| ||||||||||| ||||| ||||| | |||||| ||| | ||||||||||||    
T  26370533 aggctgccttagctaatttatgagcaacctcatttgcttgcctccgcacaaactcaacagtcgagttttcataa 26370460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 33845670 - 33845755
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    |||| ||||||| ||||||| ||||||||   ||| ||||||||||| ||||| ||||| | |||||| |||| ||||||||||||    
T  33845670 ctagctgatgataaggccgctttagctaaactatgagcaacctcatttgcttgcctccgtacaaactcaacacgagagttttcata 33845755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 27635212 - 27635142
Alignment:
Q  35 ccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| |||||||||| ||| ||||||| ||| ||||||||||| | |||||| ||| | ||||||||||||    
T  27635212 ccgctttagctaatttatgagcaaccttatttgcttgtctccgtacaaactcaacagtcgagttttcataa 27635142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 6745327 - 6745388
Alignment:
Q  172 gataagaagttgtcaacaactcttttcgcgtcaagctcgaaatcaattggtccaagttgaag 233  Q
    |||||||| || ||||||||||| ||||| ||||||| ||||||||  |||||||| |||||    
T  6745327 gataagaaattatcaacaactctcttcgcatcaagcttgaaatcaacaggtccaagatgaag 6745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 26510069 - 26510162
Alignment:
Q  12 ctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    ||||||||||| |||  |||  ||||||||| ||||  |||| ||  ||||||| ||||||||||| | |||||||||  ||||||||||||||    
T  26510069 ctggaaactagctgacaatgtagccgccttaactaaagcatgagctgcctcatttgcttgtctccgtacaaactccaccttagagttttcataa 26510162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45421697 - 45421459
Alignment:
Q  1 ttaaccaggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 100  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45421697 ttaaccagaatctggaaactaactgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtcttcgaataaactccacactagagtttt 45421598  T
Q  101 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagttgtcaacaactcttttcgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45421597 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgc 45421498  T
Q  201 gtcaagctcgaaatcaattggtccaagttgaagaagatg 239  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  45421497 gtcaagctcgaaatcaatatgtccaagttgaagaagatg 45421459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 38836798 - 38836666
Alignment:
Q  77 gaataaactccacactagagttttcataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataa 176  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||||||| |||||    
T  38836798 gaataaacttcacactaaagttttcataaaataaattgaaaagagttttacatccgtgtattatgctaccaaactcattagcatcatgttgtgccgataa 38836699  T
Q  177 gaagttgtcaacaactcttttcgcgtcaagctc 209  Q
    |||| ||||||||||||||||||||||||||||    
T  38836698 gaagctgtcaacaactcttttcgcgtcaagctc 38836666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 21485578 - 21485668
Alignment:
Q  16 aaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaa 106  Q
    ||||||| |||| ||| | |||||||||||||||||||| ||||||||||  |||||| ||  |||||||| ||||||||| |||||||||    
T  21485578 aaactagctgataatgtgaccgccttagctaattcatggacaacctcatttacttgtcaccttataaactctacactagagctttcataaa 21485668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 40687031 - 40686969
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||| ||||||||||||||||||||||| | |||||||| |||||||||||||  |||||||    
T  40687031 gccttggctaattcatgggcaacctcatttgtttgtctcccaataaactccacatgagagttt 40686969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 17777864 - 17777958
Alignment:
Q  11 tctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||| ||||| |||  || |||||||||||||||||| ||| |||| || ||| ||||||||||| | |||||| ||| | ||||||||||||    
T  17777864 tctggagactagttgacaataaggccgccttagctaatttatgagcaatcttatttgcttgtctccgtacaaactctacagtcgagttttcataa 17777958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 13501618 - 13501549
Alignment:
Q  36 cgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||| ||||| | |||| |||||||||| ||||||||||| | |||||| |||||||| |||||||||    
T  13501618 cgcctttgctaacttatggacaacctcatttgcttgtctccgtacaaactcaacactagaattttcataa 13501549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 32663765 - 32663692
Alignment:
Q  32 aggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||| ||||||||||| ||| |||| |||||| ||||||||||| | |||||| ||| | ||||||||||||    
T  32663765 aggccgtcttagctaatttatgagcaatctcatttgcttgtctccgtacaaactcaacagtcgagttttcataa 32663692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 48213581 - 48213496
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    |||| ||||||| ||||||| ||||||||   ||| ||||||||||| ||||| ||||| | |||||| |||| ||||||||||||    
T  48213581 ctagctgatgataaggccgctttagctaaactatgagcaacctcatttgcttgcctccgtacaaactcgacacgagagttttcata 48213496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 47783061 - 47782999
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  47783061 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 47782999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 4946661 - 4946738
Alignment:
Q  9 gatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactc 86  Q
    ||||||||| |||||  || ||| ||| | ||||||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  4946661 gatctggaagctaggacataatgtggctgtcttagctaactcatgagcaacctcatttgcttgcctcctaataaactc 4946738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 54781931 - 54781842
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaat 108  Q
    |||| ||| ||| ||||| ||||||||||   |||| |||||||||| ||||| ||||| | |||||| ||||  |||||||||||||||    
T  54781931 ctagctgaagataaggccaccttagctaaactatggacaacctcatttgcttgcctccgtacaaactcaacacatgagttttcataaaat 54781842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 25587972 - 25587932
Alignment:
Q  59 cctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||| ||||||||||||| |||||| ||||||||||||    
T  25587972 cctcatttgcttgtctccgaacaaactcaacactagagttt 25587932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 38836668 - 38836640
Alignment:
Q  150 ctctgtagcatcatgttgtgcagataaga 178  Q
    |||||||||||||||||||||||||||||    
T  38836668 ctctgtagcatcatgttgtgcagataaga 38836640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47142779 - 47142543
Alignment:
Q  1 ttaaccaggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 100  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  47142779 ttaaccagaatctggaaactagctgatgatgaggccgacttagctaattcatgggcaaccttattcgtttgtcttcgaataaactccacactagagtttt 47142680  T
Q  101 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagttgtcaacaactcttttcgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47142679 cataaaataaattgaaaagagttttacatctgtgtataatgctaccaaactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgc 47142580  T
Q  201 gtcaagctcgaaatcaattggtccaagttgaagaaga 237  Q
     |||||||| |||||||| ||||||||||||||||||    
T  47142579 atcaagctcaaaatcaataggtccaagttgaagaaga 47142543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 42312022 - 42311951
Alignment:
Q  33 ggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    ||||||||| |||||||||||| ||||| |||| ||||||||||||| |||||| ||||| |||||||||||    
T  42312022 ggccgcctttgctaattcatggacaaccccatttgcttgtctccgaacaaactctacactcgagttttcata 42311951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 20491575 - 20491502
Alignment:
Q  32 aggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||| | |||||| ||| | || |||||||||    
T  20491575 aggccgccttagctaatttatgagcaacctcatttgcttgtctccgtacaaactcaacagtcgacttttcataa 20491502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 28214282 - 28214346
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttc 101  Q
    ||||| |||||||||||||||||| ||||| ||||||||| ||||||||| |||  |||||||||    
T  28214282 gcctttgctaattcatgggcaaccgcattcacttgtctcctaataaactcaacatgagagttttc 28214346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 22069926 - 22069835
Alignment:
Q  13 tggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    |||||||||| |||  ||| ||||||||| | ||| ||||| ||||||||||||| ||||||||| | |||||| | |||| ||||||||||    
T  22069926 tggaaactagctgacaatgtggccgcctttgttaactcatgagcaacctcattcgtttgtctccgcacaaactcaatactacagttttcata 22069835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 26418784 - 26418846
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  26418784 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 26418846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 32108496 - 32108434
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  32108496 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 32108434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16906737 - 16906842
Alignment:
Q  1 ttaaccaggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 100  Q
    ||||||| | |||||||||||| |||| ||| |   ||||| | || ||||||| | |||||||| | ||||||||| | |||||| ||| |||||||||    
T  16906737 ttaaccaaggtctggaaactagatgataatgtgattgcctttgttagttcatggacgacctcatttgtttgtctccgtaaaaactcaacattagagtttt 16906836  T
Q  101 cataaa 106  Q
    ||||||    
T  16906837 cataaa 16906842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 18984744 - 18984793
Alignment:
Q  50 catgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    |||| ||||||||||  ||||||||||||||||||||||| | |||||||    
T  18984744 catgagcaacctcatctgcttgtctccgaataaactccacccgagagttt 18984793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 35195402 - 35195349
Alignment:
Q  55 gcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaat 108  Q
    |||||||| || | ||||||||| |||||||| |||| ||||||||||||||||    
T  35195402 gcaacctcgtttgtttgtctccgcataaactcaacaccagagttttcataaaat 35195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 14724245 - 14724054
Alignment:
Q  34 gccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaagagttttacatctgt 133  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||| |    
T  14724245 gccgccttagttaattcatgggcaacctcatttgcttgtctccgaataaact---------agttttcataaaataaattgaaaagagctttacatctat 14724155  T
Q  134 gtataatgctaccaaactctgtagcatcatgttgtgcagataagaagttgtcaacaactcttttcgcgtcaagctcgaaatcaattggtccaagttgaag 233  Q
    | ||||| |||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  14724154 ggataatactaccagactctgtagcatcatgttgtgcagatagaaagctgtcaacaactcttttcgcgtcaagctcgaaatcaataggtccaagttaaag 14724055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 20351210 - 20351301
Alignment:
Q  13 tggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    ||||||||||  ||| ||| ||||||||| |||||||||||||||  | |||| ||||||||||||| |||||| ||||| |||||||||||    
T  20351210 tggaaactagccgataatgtggccgcctttgctaattcatgggcagacccatttgcttgtctccgaacaaactctacactcgagttttcata 20351301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 25585920 - 25586013
Alignment:
Q  12 ctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    ||||||||||| |||| ||  ||||||||| ||||| | |||| |||||||||| ||||||||||| | |||||| |||| |||||||||||||    
T  25585920 ctggaaactagctgataatagggccgcctttgctaacttatggacaacctcatttgcttgtctccgtacaaactcaacaccagagttttcataa 25586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 5584098 - 5584027
Alignment:
Q  33 ggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    ||||||||| |||||||||||||||  | |||| ||||||||||||| |||||| ||||| |||||||||||    
T  5584098 ggccgcctttgctaattcatgggcagtcccatttgcttgtctccgaacaaactctacactcgagttttcata 5584027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 11737994 - 11738026
Alignment:
Q  67 gcttgtctccgaataaactccacactagagttt 99  Q
    |||||||||||| ||||||||||||||||||||    
T  11737994 gcttgtctccgattaaactccacactagagttt 11738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 19237714 - 19237666
Alignment:
Q  50 catgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    |||| ||||||||||| ||||||| || |||||||||||| ||||||||    
T  19237714 catgagcaacctcatttgcttgtcgcctaataaactccaccctagagtt 19237666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 634955 - 634880
Alignment:
Q  33 ggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaat 108  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||    
T  634955 ggccgcctttgctaattcatgggcaacctcatttgcttgtctccgaacaaactctacactcgagttttcataaaat 634880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 17058790 - 17058881
Alignment:
Q  13 tggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    |||||||||| |||  ||| || |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||| |||||||||||||||||    
T  17058790 tggaaactagctgacaatgtggtcgcctttgctaactcatgagcaacctcatttgcttgtctccgcacaaactcaacactagagttttcata 17058881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 5561669 - 5561767
Alignment:
Q  7 aggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| ||||||||||| |||  ||  ||||||||| ||||| | ||||||||||||||| ||||||||||| | |||||| |||||||| |||||||||    
T  5561669 aggagctggaaactagctgacaatagggccgcctttgctaacttatgggcaacctcatttgcttgtctccgtacaaactcaacactagaattttcataa 5561767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 13503399 - 13503290
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||||  | | || |    
T  13503399 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaaga 13503300  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  13503299 gagttttaca 13503290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 44328458 - 44328387
Alignment:
Q  34 gccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||||| ||||| | |||| |||||||||| |||||||| || | |||||| ||||||||||||||||||    
T  44328458 gccgcctttgctaacttatggacaacctcatttgcttgtcttcgtaaaaactcaacactagagttttcataa 44328387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 29704720 - 29704657
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtttt 100  Q
    ||||| |||||||||||||||||| |||||||||| |||| |||||| || |||  ||||||||    
T  29704720 gcctttgctaattcatgggcaaccacattcgcttgcctcctaataaattcaacatgagagtttt 29704657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 32073603 - 32073665
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  32073603 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 32073665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 22522606 - 22522651
Alignment:
Q  62 cattcgcttgtctccgaataaactccacactagagttttcataaaa 107  Q
    ||||||||||||||||| ||||||||||  ||||||||||| ||||    
T  22522606 cattcgcttgtctccgactaaactccaccttagagttttcaaaaaa 22522651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 43640588 - 43640499
Alignment:
Q  16 aaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    ||||||| |||  ||| |||||||||||||||  |||| ||  ||||||| ||||||||||| | |||||| ||  ||||||||||||||    
T  43640588 aaactagctgacaatgtggccgccttagctaaagcatgagctccctcatttgcttgtctccgcacaaactctaccttagagttttcataa 43640499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 52585599 - 52585664
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctc 75  Q
    ||||||||||||| ||| |||| ||||||||||| ||||  ||||||  ||||||| |||||||||    
T  52585599 atctggaaactagctgaggatgtggccgccttagttaatctatgggctgcctcatttgcttgtctc 52585664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 52266 - 52327
Alignment:
Q  172 gataagaagttgtcaacaactcttttcgcgtcaagctcgaaatcaattggtccaagttgaag 233  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||    
T  52266 gataagaagttgtcaacaactcttttcgcatcaagctcgaagtcaataggtctaagctgaag 52327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 21505094 - 21504985
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||||  | | || |    
T  21505094 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaaga 21504995  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  21504994 gagttttaca 21504985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 664988 - 665048
Alignment:
Q  39 cttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||| |||  |||||||    
T  664988 cttagctaattcatgtgcaacctcatttgcttgtctcctaataaactcgacatgagagttt 665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 19017024 - 19017086
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||| |||||||||||||||| |||| ||||| |||| ||||||||| |||| |||||||    
T  19017024 gccttagttaattcatgggcaaccacatttgcttgcctcctaataaactcaacacgagagttt 19017086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 7097392 - 7097478
Alignment:
Q  13 tggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||| |||||| || ||| ||| ||||||||||| ||||| ||||||||||| ||||| |||  ||||||||| |||  |||||||    
T  7097392 tggaagctaggtaataatgtggctgccttagctaactcatgagcaacctcatttgcttgcctcttaataaactcgacataagagttt 7097478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 24062594 - 24062667
Alignment:
Q  33 ggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaa 107  Q
    ||||||||| | |||||  |||||||||||||| ||||||||||| |  ||||| |||||| |||||||||||||    
T  24062594 ggccgcctttgataattggtgggcaacctcatttgcttgtctccgca-caactcaacactacagttttcataaaa 24062667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 29526898 - 29526836
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  29526898 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 29526836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 2175096 - 2175145
Alignment:
Q  50 catgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    |||| ||||||||||  ||||||||| ||||||||||||| |||||||||    
T  2175096 catgagcaacctcatctgcttgtctctgaataaactccaccctagagttt 2175145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 13597063 - 13596975
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    |||| |||||||| ||| |||  ||||||||||||||||  | ||||  ||||||| ||||||||||  | |||||| |||||||||||    
T  13597063 atctagaaactagttgaggatatggccgccttagctaatctaggggctgcctcatttgcttgtctcctcacaaactcaacactagagtt 13596975  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 22911318 - 22911230
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    ||||||||||||| ||| |||| |||| |||||||||||  |||| |  ||||||| ||||||||||  | |||||| | |||||||||    
T  22911318 atctggaaactagatgaagatgtggcctccttagctaatctatggcctccctcatttgcttgtctccttacaaactcaaaactagagtt 22911230  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 48770160 - 48770112
Alignment:
Q  50 catgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    |||| ||||||||||| |||| || ||||||||||||||| ||||||||    
T  48770160 catgagcaacctcattagcttctcgccgaataaactccaccctagagtt 48770112  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 24177789 - 24177680
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||||  | | || |    
T  24177789 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaaga 24177690  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  24177689 gagttttaca 24177680  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 7072568 - 7072662
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    ||||||||| ||| |||  ||| || |||||| ||||| ||||| ||||||||||| | ||||||| | | |||||| |||||||||||||||||    
T  7072568 atctggaaattagctgacaatgtggtcgcctttgctaactcatgagcaacctcatttgattgtctctgcacaaactcaacactagagttttcata 7072662  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 35220198 - 35220296
Alignment:
Q  7 aggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| ||||||||||| |||  ||  |||| |||| ||||| | |||||||| ||| || ||||||||||| | |||||| ||||||||||||||||||    
T  35220198 aggagctggaaactagctgacaatacggccacctttgctaacttatgggcaatctcgtttgcttgtctccgtacaaactcaacactagagttttcataa 35220296  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 5477361 - 5477410
Alignment:
Q  58 acctcattcgcttgtctccgaataaactccacactagagttttcataaaa 107  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||| ||||    
T  5477361 acctcattcgcttgtctccgactaaactccaccttagagttttcaaaaaa 5477410  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 15950870 - 15950808
Alignment:
Q  37 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    ||||||||||||||||| ||||||||||| ||||| |||| | ||||||| |||  |||||||    
T  15950870 gccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagttt 15950808  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 5827718 - 5827630
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    ||||||||||||| ||| || | |||| |||||||||||  ||| ||  ||||||| ||||||||||  | |||||| |||||||||||    
T  5827718 atctggaaactagctgaagacgtggcctccttagctaatgtatgagctgcctcatttgcttgtctccttacaaactcaacactagagtt 5827630  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 15610254 - 15610166
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    ||||||| ||||| ||| |||| || || ||||||||||  |||||| |||||||| | ||||||||  | |||||| |||||||||||    
T  15610254 atctggatactagttgaggatgtggtcgtcttagctaatctatgggctacctcatttgtttgtctcctcacaaactcaacactagagtt 15610166  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 4424630 - 4424728
Alignment:
Q  7 aggatctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||| ||||||||||| |||  ||  |||| |||| ||||| | ||||||||||||||| ||||||||||| | |||||| ||||||||||||| ||||    
T  4424630 aggagctggaaactagctgacaatagggccacctttgctaacttatgggcaacctcatttgcttgtctccgtacaaactcaacactagagtttttataa 4424728  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 10544032 - 10543963
Alignment:
Q  36 cgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 105  Q
    |||||||||||||| |||  |||||||||| ||||||||||| | |||||| ||| | ||||||||||||    
T  10544032 cgccttagctaatttatgaacaacctcatttgcttgtctccgtacaaactcaacagtcgagttttcataa 10543963  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 13523129 - 13523238
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||| ||||| ||||| ||||| | |||||| |||| ||||||| ||||||||  | | || |    
T  13523129 ctagctgaagataaggccgccttagctaaactatgggcaacatcatttgcttgcctccgtacaaactcaacacaagagtttacataaaattgactaaaga 13523228  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  13523229 gagttttaca 13523238  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 13612664 - 13612773
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| ||||||||||||||||   ||||||||| ||||| ||||| ||||| | |||||| |||| ||||||| ||||||||  | | || |    
T  13612664 ctagctgaagataaggccgccttagctaaactatgggcaacttcatttgcttgcctccgtacaaactcaacacaagagtttccataaaattgactaaaga 13612763  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  13612764 gagttttaca 13612773  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 8871829 - 8871917
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    |||| ||||| || |||||||| || |||||||||||||| |||||| |||||||| |||||| |||  | |||||| |||||| ||||    
T  8871829 atcttgaaacaagctgatgatgtggtcgccttagctaatttatgggctacctcatttgcttgtatcctcacaaactcaacactaaagtt 8871917  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 3989591 - 3989530
Alignment:
Q  38 ccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttt 99  Q
    |||||| ||||| ||||||||||||||| |||||||  | |||||||||||||  |||||||    
T  3989591 ccttagataatttatgggcaacctcatttgcttgtcgtctaataaactccacatgagagttt 3989530  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 17834351 - 17834439
Alignment:
Q  10 atctggaaactaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagtt 98  Q
    ||||||||||||| ||| |||| ||||||||||||||||  |||||    |||||| | ||||||||  | |||||| |||||||||||    
T  17834351 atctggaaactagctgaggatgtggccgccttagctaatctatgggttgtctcatttgtttgtctcctcacaaactcaacactagagtt 17834439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 25939078 - 25939034
Alignment:
Q  58 acctcattcgcttgtctccgaataaactccacactagagttttca 102  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||    
T  25939078 acctcattcgcttgtctccgactaaactctaccttagagttttca 25939034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 33535499 - 33535571
Alignment:
Q  34 gccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaa 106  Q
    ||||||||| ||||||||||||||||||| || | || ||||  || |||||  ||||||||||||| |||||    
T  33535499 gccgccttaactaattcatgggcaacctcttttgtttatctcttaacaaacttgacactagagtttttataaa 33535571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 44587701 - 44587649
Alignment:
Q  50 catgggcaacctcattcgcttgtctccgaataaactccacactagagttttca 102  Q
    |||| |||||| |||||| |||||||||| ||||||||||  |||||||||||    
T  44587701 catgagcaaccacattcgattgtctccgactaaactccaccttagagttttca 44587649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 203164 - 203273
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataaaataaattgaaaa 118  Q
    |||| ||| ||| |||| |||||||||||   ||||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||||  | | || |    
T  203164 ctagctgaagataaggctgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataaaattgactaaaga 203263  T
Q  119 gagttttaca 128  Q
    ||||||||||    
T  203264 gagttttaca 203273  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 11111 - 11026
Alignment:
Q  19 ctaggtgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcata 104  Q
    |||| ||||||| ||||||| ||||||||   ||| ||||||||||| ||||| ||||| | |||||| |||| ||||||||||||    
T  11111 ctagctgatgataaggccgctttagctaaactatgagcaacctcatttgcttgcctccgtacaaactcaacacgagagttttcata 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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