View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_132 (Length: 255)

Name: NF6076_low_132
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_132
NF6076_low_132
[»] chr4 (3 HSPs)
chr4 (188-255)||(8244619-8244686)
chr4 (188-255)||(8248688-8248755)
chr4 (13-88)||(8244439-8244517)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 8244619 - 8244686
Alignment:
Q  188 ttatgtagacatatgtgattgaaggggatcatttacttatcaataataatttgatttgatgaataaga 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8244619 ttatgtagacatatgtgattgaaggggatcatttacttatcaataataatttgatttgatgaataaga 8244686  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 8248688 - 8248755
Alignment:
Q  188 ttatgtagacatatgtgattgaaggggatcatttacttatcaataataatttgatttgatgaataaga 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8248688 ttatgtagacatatgtgattgaaggggatcatttacttatcaataataatttgatttgatgaataaga 8248755  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 8244439 - 8244517
Alignment:
Q  13 aaaattaattacgattattcttgatacata---tcatgtgatgtgattacggaaactaataaataatttgatatataag 88  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||    
T  8244439 aaaattaattacgattattcttgatacatactatcatgtgatgtgattgcggaaactaataaataatttgatatataag 8244517  T

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