View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_137 (Length: 251)

Name: NF6076_low_137
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_137
NF6076_low_137
[»] chr6 (21 HSPs)
chr6 (4-243)||(2954585-2954829)
chr6 (154-243)||(2996703-2996793)
chr6 (152-223)||(2938116-2938187)
chr6 (152-242)||(2935255-2935349)
chr6 (163-223)||(2974674-2974734)
chr6 (152-243)||(2929965-2930059)
chr6 (81-144)||(2996867-2996930)
chr6 (154-223)||(2983524-2983593)
chr6 (85-144)||(2935124-2935183)
chr6 (152-205)||(2927816-2927869)
chr6 (192-243)||(2965228-2965280)
chr6 (81-140)||(2937981-2938040)
chr6 (85-144)||(2929834-2929893)
chr6 (81-140)||(2974528-2974587)
chr6 (185-235)||(2986421-2986472)
chr6 (81-144)||(3003278-3003341)
chr6 (2-56)||(2978488-2978542)
chr6 (81-144)||(2927681-2927744)
chr6 (2-56)||(2937702-2937756)
chr6 (2-56)||(2974249-2974303)
chr6 (81-122)||(2965030-2965071)
[»] scaffold0024 (2 HSPs)
scaffold0024 (153-242)||(34573-34663)
scaffold0024 (4-56)||(44713-44765)
[»] chr7 (3 HSPs)
chr7 (152-242)||(3339681-3339775)
chr7 (81-144)||(3339546-3339609)
chr7 (2-56)||(3339267-3339321)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 2954585 - 2954829
Alignment:
Q  4 gagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgtttggagtagtgacattaccctaatggtctttgcaaagaattaaatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2954585 gagttcttggaattcctcaattaagagttgatgatcagaccgatattttgtttggagtagtgtcattaccctaatggtctttgcaaagaattaaatgctt 2954684  T
Q  104 tttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatc-----acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  2954685 tttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagt 2954784  T
Q  199 gatttctttcattgttgagttcatattattgctattagtattatc 243  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  2954785 gatttctttcaatgttgagttcatattattgctattagtattatc 2954829  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 2996793 - 2996703
Alignment:
Q  154 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996793 ttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2996703  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 2938116 - 2938187
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2938116 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcata 2938187  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 2935255 - 2935349
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaa---gcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 242  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2935255 acttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 2974674 - 2974734
Alignment:
Q  163 tttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2974674 tttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcata 2974734  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 2929965 - 2930059
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||| ||||||| ||||  |||||||    
T  2929965 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 2996930 - 2996867
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2996930 tctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcagg 2996867  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 2983524 - 2983593
Alignment:
Q  154 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 223  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  2983524 ttcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcata 2983593  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 2935124 - 2935183
Alignment:
Q  85 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2935124 tgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcagg 2935183  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 2927816 - 2927869
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttct 205  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2927816 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 2965228 - 2965280
Alignment:
Q  192 tcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 243  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2965228 tcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 2937981 - 2938040
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 140  Q
    |||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||    
T  2937981 tctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactct 2938040  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 2929834 - 2929893
Alignment:
Q  85 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||| |||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  2929834 tgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcagg 2929893  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 2974528 - 2974587
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 140  Q
    ||||||||||||||| ||||||| ||||||||||||||||| || |||||||||| ||||    
T  2974528 tctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctct 2974587  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  185 acaagcctcctagtgatttctttcattgttgagttcat-attattgctatta 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 3003341 - 3003278
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||| ||||||| |||||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  3003341 tcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcagg 3003278  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2978488 - 2978542
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||    
T  2978488 aggagttcttgaaattcctcaattaagagttgaggatgggaccgaaattttgttt 2978542  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 2927681 - 2927744
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||||||||||| |||||||||| ||||| ||||||  | | ||||||||||||||||||||||    
T  2927681 tctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcagg 2927744  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2937702 - 2937756
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  2937702 aggagttcttgaaattcctcaattaacagttgaggattcgaccgaaattttgttt 2937756  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2974249 - 2974303
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||| | |||  ||||||||||||||||    
T  2974249 aggagttcttgaaattcctcaattaacagttcaagatgggaccgaaattttgttt 2974303  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 2965030 - 2965071
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcg 122  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  2965030 tctttgcaaagatttgaatgctttttgtgggaatccttggcg 2965071  T

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Target: scaffold0024 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 34663 - 34573
Alignment:
Q  153 cttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 242  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34663 cttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 34573  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 44765 - 44713
Alignment:
Q  4 gagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||| ||||||||||||||||| |||||||||  | ||||||||||||    
T  44765 gagttcttgaaattcctcaattaagagctgatgatcaacctgaaattttgttt 44713  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 3339681 - 3339775
Alignment:
Q  152 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat----attattgctattagtattat 242  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    ||||||||| ||||||||||    
T  3339681 acttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 3339546 - 3339609
Alignment:
Q  81 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 144  Q
    |||| ||||||| ||||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  3339546 tcttggcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcagg 3339609  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 3339267 - 3339321
Alignment:
Q  2 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 56  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  3339267 aggagttcttgaaattcctcaattaacagttgacgatgggaccgaaattttgttt 3339321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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