View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_140 (Length: 250)
Name: NF6076_low_140
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36606402 - 36606156
Alignment:
| Q |
1 |
actgttaaacaattgtgttgttgttgatgattataa----tattatttgtcaaagaattctgttggannnnnnnncatgaattttgggattgtggtatga |
96 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
36606402 |
actgttaaacaattgtgttgttgttgatgattataaataatattatttgtcaaagaactctgttggattttttttcatgaattttgggattgtggtatga |
36606303 |
T |
|
| Q |
97 |
aggtttcagtttgtgaagaaacaagaacatgaacacaatgaatgtgtgtactcggtttctgaaaaagtttaatgaaccttatatcacaagggacaaaacc |
196 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||| || ||||||||||| |
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| T |
36606302 |
aggtttgagtttgtgaagaaacaagaacatgaacacaattaatgtgtgtactgggtttgtgaaaaagtttaatgaaccctatattgcaggggacaaaacc |
36606203 |
T |
|
| Q |
197 |
aaaaatgctctatattacacaggtaaaacactattaaccctttgttt |
243 |
Q |
| |
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||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
36606202 |
aaaaatgctttatattacacggataaaacactattaaccctttgttt |
36606156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 9410288 - 9410340
Alignment:
| Q |
186 |
gggacaaaaccaaaaatgctctatattacaca--ggtaaaacactattaaccc |
236 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | ||||||||||||||||||| |
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| T |
9410288 |
gggacaaaaccaaaagtgccctatattacagaggggtaaaacactattaaccc |
9410340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 3370232 - 3370277
Alignment:
| Q |
191 |
aaaaccaaaaatgctctatattacacaggtaaaacactattaaccc |
236 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
3370232 |
aaaatcaaaaatgctctatattacaaaggtaaaacactgttaaccc |
3370277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 45161391 - 45161440
Alignment:
| Q |
190 |
caaaaccaaaaatgctctatattacacaggtaaaacactattaacccttt |
239 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||||||||||||||| |
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|
| T |
45161391 |
caaaaccaaaagtgccctatattacaggggtaaaacactattaacccttt |
45161440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 36795201 - 36795152
Alignment:
| Q |
191 |
aaaaccaaaaatgctctatattacacaggtaaaacactattaaccctttg |
240 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
36795201 |
aaaaccgaaaatgacctatattacaggggtaaaacactattaaccctttg |
36795152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 42509048 - 42509097
Alignment:
| Q |
190 |
caaaaccaaaaatgctctatattacacagg-taaaacactattaaccctt |
238 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||||||||||||||||| |
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|
| T |
42509048 |
caaaaccaaaagtgccctatattacagagggtaaaacactattaaccctt |
42509097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 31750766 - 31750718
Alignment:
| Q |
191 |
aaaaccaaaaatgctctatattacacagg-taaaacactattaaccctt |
238 |
Q |
| |
|
|||||| |||||| ||||||||||| ||| ||||||||||||||||||| |
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|
| T |
31750766 |
aaaaccgaaaatgatctatattacaaagggtaaaacactattaaccctt |
31750718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 20158973 - 20159026
Alignment:
| Q |
186 |
gggacaaaaccaaaaatgctctatattacacaggtaaaacactattaacccttt |
239 |
Q |
| |
|
|||| |||||| |||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
20158973 |
gggataaaaccgaaaatgacctatattacaggggtaaaacactattaacccttt |
20159026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 33750967 - 33750915
Alignment:
| Q |
188 |
gacaaaaccaaaaatgctctatattacacaggt-aaaacactattaacccttt |
239 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
33750967 |
gacaaaatcaaaagtgctctatattacaagggttaaaacactattaacccttt |
33750915 |
T |
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