View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_143 (Length: 248)
Name: NF6076_low_143
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_143 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 2677898 - 2677660
Alignment:
| Q |
10 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggccttatcccaacccaacttcatgccaggtaacattgtgtctgtaggataatc |
109 |
Q |
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| T |
2677898 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggccttatcccaacccaacttcatgccaggtaacattgtgtctgtaggataatc |
2677799 |
T |
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| Q |
110 |
aaagctttgccatatgtaactattagaatcatggttctttccatccatcaagaccaagtttccagaatctaacaactttgcaagtggctcctgaattgac |
209 |
Q |
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| T |
2677798 |
aaagctttgccatatgtaactattagaatcatggttctttccatccatcaagaccaagtttccagaatctaacaactttgcaagtggctcctgaattgac |
2677699 |
T |
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| Q |
210 |
cttgatgaatttgtataccatattttgttacctactcca |
248 |
Q |
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| T |
2677698 |
cttgatgaatttgtataccatattttgttacctactcca |
2677660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 3052682 - 3052836
Alignment:
| Q |
84 |
ggtaacattgtgtctgtaggataatcaa----agctttgccatatgtaactattagaatcatggt--tctttccatccatcaagaccaagtttccagaat |
177 |
Q |
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| T |
3052682 |
ggtaacattgtgtctgttggataatcaatcaaagctttgccatgtgcaattagaagaatcatgttaatctctccatccttcaagaccaagtttccagaat |
3052781 |
T |
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| Q |
178 |
ctaacaactttgcaagtggctcctgaattgaccttgatgaatttgtataccatat |
232 |
Q |
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| T |
3052782 |
ctaacatttttgcaagtggctcttgaattgatcctgatgaatttgtagaccatat |
3052836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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