View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_150 (Length: 243)

Name: NF6076_low_150
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_150
NF6076_low_150
[»] chr6 (15 HSPs)
chr6 (1-126)||(2954322-2954447)
chr6 (129-225)||(5582407-5582503)
chr6 (129-216)||(34188721-34188809)
chr6 (129-215)||(9047025-9047111)
chr6 (129-215)||(10397890-10397977)
chr6 (127-197)||(339266-339335)
chr6 (129-209)||(9695975-9696055)
chr6 (144-216)||(28614480-28614552)
chr6 (129-208)||(2836317-2836396)
chr6 (132-197)||(14939026-14939092)
chr6 (155-216)||(2960642-2960703)
chr6 (144-208)||(23663864-23663928)
chr6 (129-210)||(1781125-1781207)
chr6 (56-117)||(8349737-8349798)
chr6 (132-215)||(34249111-34249195)
[»] chr5 (26 HSPs)
chr5 (129-225)||(13694766-13694862)
chr5 (129-225)||(39605915-39606011)
chr5 (130-225)||(13694982-13695077)
chr5 (129-216)||(16567721-16567809)
chr5 (129-216)||(1672584-1672671)
chr5 (129-216)||(37779595-37779682)
chr5 (129-216)||(43228740-43228827)
chr5 (129-215)||(15503847-15503933)
chr5 (129-210)||(37607386-37607467)
chr5 (127-225)||(42989461-42989561)
chr5 (132-216)||(32953765-32953850)
chr5 (128-208)||(35468820-35468900)
chr5 (129-215)||(21068927-21069014)
chr5 (128-178)||(767230-767280)
chr5 (128-197)||(13942899-13942969)
chr5 (154-216)||(16667591-16667653)
chr5 (132-209)||(36234675-36234752)
chr5 (132-216)||(9738306-9738390)
chr5 (129-215)||(34443896-34443983)
chr5 (128-215)||(30248894-30248982)
chr5 (144-215)||(2476350-2476421)
chr5 (155-210)||(7162187-7162242)
chr5 (144-215)||(34846301-34846372)
chr5 (129-215)||(15675232-15675318)
chr5 (144-210)||(33006841-33006907)
chr5 (126-215)||(8214711-8214800)
[»] chr7 (15 HSPs)
chr7 (129-216)||(41759717-41759804)
chr7 (129-216)||(5991514-5991602)
chr7 (143-216)||(815082-815155)
chr7 (133-210)||(19377319-19377395)
chr7 (129-216)||(28694148-28694236)
chr7 (151-210)||(21932881-21932940)
chr7 (132-198)||(22206801-22206868)
chr7 (132-198)||(22227871-22227938)
chr7 (129-216)||(30852275-30852361)
chr7 (129-215)||(35300538-35300625)
chr7 (129-206)||(38129111-38129186)
chr7 (129-210)||(41862422-41862503)
chr7 (52-108)||(32425271-32425327)
chr7 (129-198)||(25688305-25688375)
chr7 (179-216)||(3012279-3012316)
[»] chr2 (16 HSPs)
chr2 (117-220)||(34756598-34756702)
chr2 (129-215)||(4570577-4570663)
chr2 (144-225)||(42152615-42152696)
chr2 (127-215)||(13203696-13203785)
chr2 (129-198)||(33909456-33909525)
chr2 (144-216)||(304219-304291)
chr2 (129-215)||(41114967-41115054)
chr2 (116-193)||(41010394-41010471)
chr2 (164-216)||(25562890-25562942)
chr2 (159-225)||(15429140-15429206)
chr2 (133-215)||(22572798-22572880)
chr2 (144-216)||(2475769-2475841)
chr2 (146-210)||(27701998-27702062)
chr2 (175-225)||(28816669-28816719)
chr2 (129-178)||(15651169-15651218)
chr2 (161-225)||(16221089-16221153)
[»] chr8 (14 HSPs)
chr8 (130-216)||(34282994-34283081)
chr8 (129-210)||(27321953-27322034)
chr8 (144-220)||(12478081-12478157)
chr8 (127-225)||(21138146-21138245)
chr8 (129-216)||(38214689-38214777)
chr8 (144-218)||(8968276-8968350)
chr8 (144-197)||(39431790-39431843)
chr8 (127-215)||(24964961-24965050)
chr8 (133-209)||(3384135-3384211)
chr8 (128-215)||(28927989-28928076)
chr8 (144-202)||(376381-376439)
chr8 (129-210)||(36406604-36406686)
chr8 (1-43)||(36336680-36336722)
chr8 (131-163)||(13243025-13243057)
[»] scaffold0108 (1 HSPs)
scaffold0108 (129-210)||(21101-21183)
[»] chr1 (26 HSPs)
chr1 (130-215)||(44238957-44239042)
chr1 (129-225)||(6802188-6802284)
chr1 (129-215)||(49898345-49898432)
chr1 (129-225)||(11647071-11647167)
chr1 (129-215)||(14727248-14727335)
chr1 (136-204)||(41751909-41751977)
chr1 (128-216)||(4773936-4774025)
chr1 (128-215)||(25007393-25007481)
chr1 (133-225)||(33169370-33169462)
chr1 (129-215)||(27460626-27460713)
chr1 (144-198)||(4163388-4163442)
chr1 (129-215)||(8239210-8239296)
chr1 (128-216)||(24645983-24646071)
chr1 (129-215)||(27584111-27584198)
chr1 (129-220)||(37574864-37574955)
chr1 (57-102)||(13809949-13809994)
chr1 (173-225)||(16640374-16640426)
chr1 (129-193)||(24745334-24745398)
chr1 (167-215)||(25011634-25011682)
chr1 (128-215)||(37154088-37154176)
chr1 (128-215)||(6331605-6331691)
chr1 (132-215)||(33469039-33469121)
chr1 (129-215)||(44305342-44305429)
chr1 (158-216)||(4642167-4642225)
chr1 (56-106)||(7028239-7028289)
chr1 (57-106)||(24915125-24915174)
[»] chr4 (27 HSPs)
chr4 (129-216)||(15034570-15034658)
chr4 (129-216)||(50383819-50383907)
chr4 (129-215)||(2576091-2576177)
chr4 (130-215)||(1585642-1585727)
chr4 (129-216)||(25237495-25237583)
chr4 (129-216)||(32828146-32828234)
chr4 (129-216)||(9003488-9003575)
chr4 (127-190)||(52373668-52373731)
chr4 (129-215)||(31364067-31364153)
chr4 (128-209)||(40969154-40969236)
chr4 (128-216)||(6017046-6017135)
chr4 (127-216)||(9809723-9809812)
chr4 (130-215)||(49744972-49745057)
chr4 (129-209)||(32005846-32005926)
chr4 (129-208)||(8901735-8901814)
chr4 (129-202)||(36947447-36947520)
chr4 (130-216)||(41972534-41972622)
chr4 (129-216)||(9694019-9694106)
chr4 (127-215)||(31929141-31929229)
chr4 (144-215)||(4552132-4552203)
chr4 (129-215)||(10715585-10715673)
chr4 (129-215)||(10929355-10929443)
chr4 (144-216)||(11827123-11827195)
chr4 (129-215)||(2017535-2017622)
chr4 (165-215)||(46645559-46645609)
chr4 (127-215)||(4728475-4728564)
chr4 (59-103)||(3155553-3155597)
[»] chr3 (21 HSPs)
chr3 (129-215)||(26278289-26278374)
chr3 (129-215)||(37516567-37516653)
chr3 (129-215)||(53651835-53651921)
chr3 (132-216)||(33179221-33179306)
chr3 (128-216)||(41218480-41218569)
chr3 (129-216)||(9600287-9600374)
chr3 (127-225)||(38239388-38239486)
chr3 (127-220)||(41199983-41200077)
chr3 (129-216)||(53987800-53987888)
chr3 (135-197)||(41358743-41358805)
chr3 (129-210)||(54845987-54846068)
chr3 (129-215)||(44047520-44047607)
chr3 (129-215)||(25391922-25392009)
chr3 (129-215)||(44625634-44625721)
chr3 (130-200)||(43447476-43447546)
chr3 (163-215)||(7500915-7500967)
chr3 (131-215)||(14461007-14461088)
chr3 (57-103)||(30956700-30956746)
chr3 (57-103)||(30972512-30972558)
chr3 (129-215)||(12909763-12909843)
chr3 (134-215)||(43700252-43700333)
[»] scaffold0638 (1 HSPs)
scaffold0638 (144-216)||(4045-4117)
[»] scaffold0075 (2 HSPs)
scaffold0075 (128-215)||(11455-11542)
scaffold0075 (131-215)||(6843-6928)
[»] scaffold0021 (1 HSPs)
scaffold0021 (129-197)||(109427-109494)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2954447 - 2954322
Alignment:
Q  1 ccctcaaatttaaattttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaagaaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2954447 ccctcaaatttaaaatttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaggaaa 2954348  T
Q  101 tagtttttatacaaacaatcgtcatg 126  Q
    |||||||||||||| |||| ||||||    
T  2954347 tagtttttatacaagcaattgtcatg 2954322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 5582407 - 5582503
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || | ||||| ||||||||| ||||    
T  5582407 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagcacagctattactagaacctctcgctt 5582503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 34188721 - 34188809
Alignment:
Q  129 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| || | ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  34188721 caggggcggagtcacctcccagctagcctgggcactagccgaggctcagctccaactttctttgtagcaagcccagccattactagaac 34188809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 9047111 - 9047025
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    | ||||  |||||||||||||||||||||| ||||||||||||||| ||||    
T  9047111 caggggcggagccacccccagctagcctgggctagtgtccagactcagcttcaactttctttgtagtaagtccaaccattactagaa 9047025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 10397977 - 10397890
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||  ||||||||||| ||||    
T  10397977 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaaacccaaccattacgagaa 10397890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 339266 - 339335
Alignment:
Q  127 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||  ||||||  |||||||||||||||||    
T  339266 atcaagggcggagcca-ccccagctagcctgggcattagcccagattcagctctaactttctttgtagcaa 339335  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 9695975 - 9696055
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 209  Q
    ||||||||||| || |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| |||||    
T  9695975 caggggcggagtcacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaatcatta 9696055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 28614552 - 28614480
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| |||||||||||||||| |||||| ||| | ||||||||||||| | | ||||||| |||||    
T  28614552 ccccagctagcgtgggcactagcccaggctcagctccaattatctttgtagcaagcctagccattactagaac 28614480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 2836396 - 2836317
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 208  Q
    |||||||||||||| ||||||||| |  |||||||||  |||| | |||| ||||||||||||||||||  |||||||||    
T  2836396 caggggcggagccacccccagctaactcgggcactagttcaggtttagctccaactttctttgtagcaaacccaaccatt 2836317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 14939092 - 14939026
Alignment:
Q  132 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    ||||||||||| |||| ||||||||||| ||||||| |||| |||||| ||| ||||||||||||||    
T  14939092 gggcggagccaccccccagctagcctggacactagctcaggctcagctccaattttctttgtagcaa 14939026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 2960642 - 2960703
Alignment:
Q  155 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||||||| ||| ||| |||||    
T  2960642 ctgggtactagcccaggctcagctccaattttctttgtagcaagtccagccaatactagaac 2960703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 23663928 - 23663864
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 208  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  23663928 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 23663864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 1781207 - 1781125
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||| |||| |||||| ||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  1781207 caggggcggagccaccccccagctagtctgggctagtgcccaggttcggctccaactttctttgtagcaaacccaaccattac 1781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 8349737 - 8349798
Alignment:
Q  56 ttatacaaaaactatttaactatattttatctttagctaaagaaatagtttttatacaaaca 117  Q
    ||||| |||||| |||||||| |||||||||||| | || ||||||||||| || |||||||    
T  8349737 ttatataaaaacaatttaactttattttatcttttgttagagaaatagtttatacacaaaca 8349798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 34249195 - 34249111
Alignment:
Q  132 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||| |||| ||||||| |||||    ||||||  ||| || ||||||||||||||||||| ||||||||||| ||||    
T  34249195 gggcggagccaccccccagctagcttgggctagtgcccagactcaactccaactttctttgtagcaagcccaaccattactagaa 34249111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 13694766 - 13694862
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| ||||| ||| ||||    
T  13694766 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttcaactttctttgtagcaagcccatccattactagaacttctcgctt 13694862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 39606011 - 39605915
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||| |||||||||||||| ||||||||||||  |||||||| |||||||||||| |||||||| ||||||  ||||||||||||||    
T  39606011 caggggcggagccacccccagctagcctgagcactagcccagactcagcttctactttctttgtaacaagtccatccattattagaacctcttgctt 39605915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 13694982 - 13695077
Alignment:
Q  130 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||    
T  13694982 aggggcggagccacccctagctagcctgggcactagctcaggctcagcttcaactttctttgtagcaagttcatccattactagaacttctcgctt 13695077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 16567721 - 16567809
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| |||||    
T  16567721 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagtccagccattactagaac 16567809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 1672671 - 1672584
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||  ||||||||||| |||||    
T  1672671 caggggcggagccacccccagctagcctgggcactagctcaggctcagctccaattttctttgtagcaatcccaaccattactagaac 1672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 37779595 - 37779682
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || ||||||| |||||    
T  37779595 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattactagaac 37779682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 43228827 - 43228740
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||| ||| ||||||| |||||    
T  43228827 caggggcggagccacccccagctagcctgggcactagccaaggctcaactccaattttctttgtagcaagcccagccattactagaac 43228740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 15503847 - 15503933
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| ||| |||||| ||||||||||||||| | ||||||||| ||||    
T  15503847 caggggcggagccaccccaagctagtctgggcactagcccaggctcaccttcaaatttctttgtagcaagcctaaccattactagaa 15503933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 37607386 - 37607467
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || |||||||    
T  37607386 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattac 37607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 42989461 - 42989561
Alignment:
Q  127 atcaggggcggagccatcccc-agctagcctggg-cactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgct 224  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||  ||||| ||| ||||||| ||||| ||| |||    
T  42989461 atcaggggcggagccaccccccagctagcctggggcactagcccaggatcagcttctactttctttgaggcaagcccagccattactagaacttctcgct 42989560  T
Q  225 t 225  Q
    |    
T  42989561 t 42989561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 32953850 - 32953765
Alignment:
Q  132 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||||| ||| ||||||||||||||| ||| ||||||| |||||    
T  32953850 gggcggagccaccccccagctagcctgggcactagccgaggctcagctccaattttctttgtagcaagcccagccattactagaac 32953765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 35468820 - 35468900
Alignment:
Q  128 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 208  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  35468820 tcaggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 35468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 21068927 - 21069014
Alignment:
Q  129 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||  ||||||||||||||||||||||| |||| ||| ||  |||||||||||||| ||| ||||||||||| ||||    
T  21068927 caggggcggagccacaccccagctagcctgggcactagctcaggctcaactctaactttctttgtagtaagcccaaccattactagaa 21069014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 767230 - 767280
Alignment:
Q  128 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagct 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  767230 tcaggggcggagccacccccagctagcctgggcactagcccaggctcagct 767280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 13942969 - 13942899
Alignment:
Q  128 tcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | ||||||||||||||||||    
T  13942969 tcaggggcggagccacctcccaactagcctgggcactagcccaggctcaggtccaactttctttgtagcaa 13942899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 16667653 - 16667591
Alignment:
Q  154 cctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||| ||||||| |||||    
T  16667653 cctgggcactagcccagactcagctccaactttctttgtagcaagtccagccattactagaac 16667591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 36234752 - 36234675
Alignment:
Q  132 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 209  Q
    ||||||||||| |||||| |||||||| |||||||||||  |||||| ||| ||||||||||||||| ||| ||||||    
T  36234752 gggcggagccacccccagttagcctggacactagcccagactcagctccaattttctttgtagcaagcccagccatta 36234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 9738306 - 9738390
Alignment:
Q  132 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| ||||||||||  || |||||||||| |  |||||||| |||||||||| |||||| ||||||||||| |||||    
T  9738306 gggcggagccacccccagctagtttgtgcactagccctgactcagcttctactttctttgaagcaagcccaaccattactagaac 9738390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 34443896 - 34443983
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  34443896 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 34443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 30248894 - 30248982
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||    
T  30248894 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaa 30248982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 2476350 - 2476421
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||||||    ||||||| |||||| ||| |||||||||||||||||| |||||||| ||||    
T  2476350 ccccagctagcctgggctagtgcccaggctcagctccaattttctttgtagcaagtcctaccattactagaa 2476421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 7162242 - 7162187
Alignment:
Q  155 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| ||| |||||||    
T  7162242 ctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattac 7162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 34846301 - 34846372
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||||| ||||||||| ||||    
T  34846301 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagtcaaaccattactagaa 34846372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 15675232 - 15675318
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    ||||||| || |||  |||||||||||| ||||  ||||||||||| ||||    
T  15675232 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctctaactttctttgttgcaaacccaaccattactagaa 15675318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 33006841 - 33006907
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  33006841 ccccagctagcctgggctaatgcccaggctcggctccaactttctttgtagcaaacccaaccattac 33006907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 8214800 - 8214711
Alignment:
Q  126 gatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||| |||||| ||| | |||||||||||| ||||||| ||||  | |||| ||||||| |||||| |||||| | ||||||| ||||    
T  8214800 gatcagaggcggaaccacctccagctagcctgagcactagtccagacttagctccaactttttttgtaacaagtctagccattactagaa 8214711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 41759804 - 41759717
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  41759804 caggggcggagccacccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagcccagccattactagaac 41759717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 5991602 - 5991514
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||| ||| ||||||| |||||    
T  5991602 caggggcggagccaccccccagctagcctgggcactagcccaggctcaactccaattttctttgtagcaagcccagccattactagaac 5991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 815155 - 815082
Alignment:
Q  143 tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||||||| |||||    
T  815155 tccccagttagcctgggcactagcccaggctcagctccaactttctttgtagcaaatctagccattactagaac 815082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 19377319 - 19377395
Alignment:
Q  133 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||| |||| |||||||    
T  19377319 ggcggagcca-ccccagctagcttgggcactagcccaggctcagctccaactttctttgtaacaactccagccattac 19377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 28694236 - 28694148
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |  ||||||| |||||    
T  28694236 caggggcgtagccatcccccagctagcctggacactaacccaggctcagctccaactttctttgtagcaagttccgccattactagaac 28694148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 21932940 - 21932881
Alignment:
Q  151 tagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  21932940 tagcctgggcactagcccaggctcaactccaactttctttgtagcaagcccaaccattac 21932881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 22206868 - 22206801
Alignment:
Q  132 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 198  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  22206868 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaag 22206801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 22227871 - 22227938
Alignment:
Q  132 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 198  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  22227871 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaag 22227938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 30852275 - 30852361
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| |||||    
T  30852275 caggggcagagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaac 30852361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 35300625 - 35300538
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  35300625 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 35300538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38129186 - 38129111
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaacca 206  Q
    |||||||||||||| ||||||||||| ||||||||| | |||| ||||||  ||||||| || |||||||||||||||    
T  38129186 caggggcggagcca-ccccagctagcatgggcactaactcaggctcagctcaaactttc-ttatagcaagtccaacca 38129111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 41862503 - 41862422
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    ||||||||||||||  ||||||||| |||||||||||||||   |||||| | |||||||||| ||||| | || |||||||    
T  41862503 caggggcggagccaaacccagctagtctgggcactagcccatactcagctcctactttctttgcagcaaattcagccattac 41862422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 32425327 - 32425271
Alignment:
Q  52 taagttatacaaaaactatttaactatattttatctttagctaaagaaatagttttt 108  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||  ||||||||||||    
T  32425327 taagttattcaaaatcaatttaactacattttatctttagctacggaaatagttttt 32425271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 25688375 - 25688305
Alignment:
Q  129 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 198  Q
    |||||||||||||| | ||||| ||| ||||| ||||||||||  |||||| ||| |||||||||||||||    
T  25688375 caggggcggagccaccacccagttagtctgggtactagcccagactcagctccaattttctttgtagcaag 25688305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 3012279 - 3012316
Alignment:
Q  179 tcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  3012279 tcaactttctttgtagcaagcccaaccattactagaac 3012316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 34756598 - 34756702
Alignment:
Q  117 aatcgtcatgatcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||| |||| ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||  || |||| ||||    
T  34756598 aatcatcataatcagggacggagccaccccccagctagcctgggcactagcccaggctcagcttctactttctttgtagcaagtccggccgttactagaa 34756697  T
Q  216 cctct 220  Q
    |||||    
T  34756698 cctct 34756702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 4570663 - 4570577
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||| ||| ||| ||||||| ||||    
T  4570663 caggggcggagccacccccagctagcatgggcactagcccaggctgagcttctactttctttgtagtaagcccagccattactagaa 4570577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 42152696 - 42152615
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||| ||||||||||| ||||| |||||||| |||||||||||||||| |||| ||||||  ||||||||| ||||    
T  42152696 ccccagctagtctgggcactagtccaggttcagcttctactttctttgtagcaaatccagccattattagaacctctcgctt 42152615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 13203696 - 13203785
Alignment:
Q  127 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||| ||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  13203696 atcaggggtggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaa 13203785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 33909525 - 33909456
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 198  Q
    |||||||||||||| || |||||| |||||||||||||||||  | |||| |||||||||||||||||||    
T  33909525 caggggcggagccaccctcagctaacctgggcactagcccagacttagctccaactttctttgtagcaag 33909456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 304291 - 304219
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||  || ||||||| |||||    
T  304291 ccccagctagcttgggcactagcccaagctcagctccaactttctttgtagcaagctcagccattactagaac 304219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 41115054 - 41114967
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||||||| |||||||||||||    ||||||| || ||| |||||||||||||||||||  |||||||||| ||||    
T  41115054 caggggcggagccatcccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagctcaaccattactagaa 41114967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 41010394 - 41010471
Alignment:
Q  116 caatcgtcatgatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 193  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||||||| | ||  |||||| ||||||| ||||||    
T  41010394 caatcatcaagatctggggcggagccaaccccagctagcctgggcactagtctagactcagctccaactttttttgta 41010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 25562890 - 25562942
Alignment:
Q  164 agcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||| |||||    
T  25562890 agcccaggctcagctccaactttctttgtagcaagcccaaccattactagaac 25562942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 15429140 - 15429206
Alignment:
Q  159 gcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||| |||| |||||||| |||||||||||||||||||  | |||||| ||||||||| ||||    
T  15429140 gcactagctcaggctcagcttctactttctttgtagcaagtctgatcattactagaacctctcgctt 15429206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 22572880 - 22572798
Alignment:
Q  133 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||| |||| ||||||||||||    | ||||| |||||| ||||||||||||||||||| | ||||||||| ||||    
T  22572880 ggcggagccacccccggctagcctgggctagtgtccaggctcagctccaactttctttgtagcaagcctaaccattactagaa 22572798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 2475769 - 2475841
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||  |||||||||| ||||  |||||| ||||||||||||||| ||| ||| ||||||| |||||    
T  2475769 ccccagctagtttgggcactagtccagactcagctccaactttctttgtaggaagcccagccattactagaac 2475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 27701998 - 27702062
Alignment:
Q  146 ccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||| |||| ||| |||| |||||||    
T  27701998 ccagttagcctgggcactagcctaggctcagctccaactttctctgtaacaaatccagccattac 27702062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 28816669 - 28816719
Alignment:
Q  175 agcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||| |||| |||||||||||||||| ||||||  ||||||||||||||    
T  28816669 agcttctacttactttgtagcaagtccagccattattagaacctcttgctt 28816719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 15651169 - 15651218
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagct 178  Q
    |||||||||||||| ||||||||||||| | |||||||||| | ||||||    
T  15651169 caggggcggagccacccccagctagcctcgacactagcccatgctcagct 15651218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 16221153 - 16221089
Alignment:
Q  161 actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    ||||||||||| |||| ||| ||||||| |||| ||||  |||||||||| ||||| ||||||||    
T  16221153 actagcccaggctcaggttctactttctgtgtaacaagcacaaccattactagaacttcttgctt 16221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 34283081 - 34282994
Alignment:
Q  130 aggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||| |||||    
T  34283081 aggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagtccagtcattactagaac 34282994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 27322034 - 27321953
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||| ||| |||||||    
T  27322034 caggggcggagccacccccagctagcctgggcacttgcccaggctcagctccaattttctttgtagcaagcccagccattac 27321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 12478081 - 12478157
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctct 220  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| | |||||||||    
T  12478081 ccccagctagcctgggcactagcccaggatcaacttctactttctttgtagcaagtccatctattgctagaacctct 12478157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 21138245 - 21138146
Alignment:
Q  127 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||||| |||| ||||||| | |||| ||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||    
T  21138245 atcaggggcggagccaccccccagctagcataggcattagtccaggctcagcttctactttctttgtagcaagcctaaccattactagaacctcttgctt 21138146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 38214689 - 38214777
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| ||||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||| |||||    
T  38214689 caggggcggagccaccccccagctagcctgggcactagcccgggctcagctccaattttctttgtagcaagtccagccaatactagaac 38214777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 8968276 - 8968350
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacct 218  Q
    ||||||||||||| |||||||||||||  |||||||| |||| |||||||||||||||| ||||||| |||||||    
T  8968276 ccccagctagcctaggcactagcccagactcagcttctacttcctttgtagcaagtccagccattactagaacct 8968350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 39431843 - 39431790
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  39431843 ccccagctagcctgggcactagcccgggctcagctccaactttctttgtagcaa 39431790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 24964961 - 24965050
Alignment:
Q  127 atcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||| ||||||||||| | ||||||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||||||||| ||||    
T  24964961 atcatgggcggagccaccacccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccattactagaa 24965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 3384211 - 3384135
Alignment:
Q  133 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 209  Q
    |||||||||| | ||||||||||||||     ||||||| |||||| |||||||||||||||||||||| |||||||    
T  3384211 ggcggagccacctccagctagcctgggttagtgcccaggctcagctccaactttctttgtagcaagtcctaccatta 3384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 28927989 - 28928076
Alignment:
Q  128 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| |||||||||  ||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||    
T  28927989 tcaggggcggagccacccccagctattctgggctagtgcccaggctcggctccaactttctttgtagcaagcctaaccattactagaa 28928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 376381 - 376439
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 202  Q
    ||||||||||||||||||||||||| || |||||| | ||||||||| || ||||||||    
T  376381 ccccagctagcctgggcactagcccgggctcagctgctactttctttataccaagtcca 376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 36406686 - 36406604
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| ||||||    
T  36406686 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaacattac 36406604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36336680 - 36336722
Alignment:
Q  1 ccctcaaatttaaattttatgtgcaaatattcccttcaaattt 43  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||    
T  36336680 ccctcaaattcaaaatttatgtgcaaatatccccttcaaattt 36336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 13243025 - 13243057
Alignment:
Q  131 ggggcggagccatccccagctagcctgggcact 163  Q
    |||||||||||| ||||||||||||||||||||    
T  13243025 ggggcggagccacccccagctagcctgggcact 13243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 21183 - 21101
Alignment:
Q  129 caggggcggagcca-tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||| |||||||    
T  21183 caggggcggagccaatccccagctagcctgggcactagcccaggctcagcttcaactttctttgttacaagcccagccattac 21101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 44239042 - 44238957
Alignment:
Q  130 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||| ||| ||||||| ||||    
T  44239042 aggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccattactagaa 44238957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 6802284 - 6802188
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || ||||||| ||||| ||| ||||    
T  6802284 caggggcagagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagctcagccattactagaacttctcgctt 6802188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 49898345 - 49898432
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||    
T  49898345 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtaacaagttcagccattactagaa 49898432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 11647071 - 11647167
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||| |||||||||||||| |||||| || ||  ||| |||| ||||||||||||||||| | | ||||||||||||||||| ||||    
T  11647071 caggggcggagccacccccagctagcctgagcactatccgagactcaacttctactttctttgtagcaagccaagccattacaagaacctctcgctt 11647167  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 14727248 - 14727335
Alignment:
Q  129 caggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| ||||| ||||||||||||    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  14727248 caggggcggagccacccccaagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagtccaaccattactagaa 14727335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 41751909 - 41751977
Alignment:
Q  136 ggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaac 204  Q
    ||||||| |||||||||||||||||||||||||||   || |||| |||||||||||||||||||||||    
T  41751909 ggagccaaccccagctagcctgggcactagcccagacgcaacttctactttctttgtagcaagtccaac 41751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 4773936 - 4774025
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||||| |||| |||||||||||||||||||||||  ||| || ||| ||| ||||||||||| ||| ||||||| |||||    
T  4773936 tcaggggcggagccaccccccagctagcctgggcactagcccagactcaactccaattttttttgtagcaagcccagccattactagaac 4774025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 25007393 - 25007481
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  25007393 tcaggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 25007481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 33169462 - 33169370
Alignment:
Q  133 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||| ||| ||||||||| ||||||| |||| | |||||||| ||||| |||||| |||| ||||||||||| | ||||||| ||||    
T  33169462 ggcggagccacccctagctagcctaggcactaacccaagctcagcttctactttttttgtaacaagcccaaccattactataacctctcgctt 33169370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 27460626 - 27460713
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| ||||||| |||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  27460626 caggggcggagccaccccctagctagcatgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaa 27460713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 4163388 - 4163442
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 198  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  4163388 ccccagctagcctgggcactagcccaggtttagctccaactttctttatagcaag 4163442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 8239210 - 8239296
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||| ||  || |||||||| ||||    
T  8239210 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagtaatccctaccattactagaa 8239296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 24645983 - 24646071
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||||| |||| ||||||| ||| ||||||| |||| ||| || |||||||||||||||||| | |||||||||| |||||    
T  24645983 tcaggggcggagccaccccccagctagcatggacactagctcaggctcaactccaactttctttgtagcaact-caaccattactagaac 24646071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 27584198 - 27584111
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||    
T  27584198 caggggcggagccaccccccagctagcctgggctagcgcccaggctcggctccaactttctttgtagcaagccaaaccattactagaa 27584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 37574864 - 37574955
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctct 220  Q
    |||||||||||||| ||||| |||| |||| |||||| ||||  ||| |||| ||||||||| ||||||||  | ||||||| |||||||||    
T  37574864 caggggcggagccacccccacctagtctggacactagtccagactcaacttctactttctttatagcaagtatagccattactagaacctct 37574955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 13809994 - 13809949
Alignment:
Q  57 tatacaaaaactatttaactatattttatctttagctaaagaaata 102  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||    
T  13809994 tatacaaaaacaatttaactttattttatcttttgctaaagaaata 13809949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 16640426 - 16640374
Alignment:
Q  173 tcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||||    
T  16640426 tcagtttctactttctttgtagcaagaccaaccattacaagaatctctcgctt 16640374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 24745334 - 24745398
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 193  Q
    |||||||||||||| |||||  ||| ||||| ||||||||||  |||||| ||||||||||||||    
T  24745334 caggggcggagccacccccaattagtctgggtactagcccagtctcagctccaactttctttgta 24745398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 25011682 - 25011634
Alignment:
Q  167 ccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  25011682 ccaggctcagctccaactttctttgtagcaagcccaaccattactagaa 25011634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 37154176 - 37154088
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| |||  | |||||||| ||||    
T  37154176 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagctctaccattactagaa 37154088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 6331605 - 6331691
Alignment:
Q  128 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||| ||||||||   |||||||||| ||||    
T  6331605 tcaggggcggagcca-ccccagctagcctgggctagtgcccaggctcggctccaactttctatgtagcaaactcaaccattactagaa 6331691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 33469121 - 33469039
Alignment:
Q  132 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||| |||||||||||||||||    ||| ||| |||||| ||||||||||| |||||| | |||||||||| ||||    
T  33469121 gggcggagcca-ccccagctagcctgggctagtgcctaggctcagctccaactttctttatagcaaattcaaccattactagaa 33469039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 44305342 - 44305429
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| ||| || || ||||| ||||    
T  44305342 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagccctacaattactagaa 44305429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 4642225 - 4642167
Alignment:
Q  158 ggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||| ||||| |||||| | |||||||||||||||||| || ||||||| |||||    
T  4642225 ggcactagtccaggctcagctccgactttctttgtagcaagttcagccattactagaac 4642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 7028289 - 7028239
Alignment:
Q  56 ttatacaaaaactatttaactatattttatctttagctaaagaaatagttt 106  Q
    |||||||||||| | |||||| |||||||||||| |||| |||||||||||    
T  7028289 ttatacaaaaacaacttaactttattttatcttttgctatagaaatagttt 7028239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 24915125 - 24915174
Alignment:
Q  57 tatacaaaaactatttaactatattttatctttagctaaagaaatagttt 106  Q
    ||||||||||| |||||||| |||||||||||  |||| |||||||||||    
T  24915125 tatacaaaaacaatttaactttattttatcttctgctatagaaatagttt 24915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 15034658 - 15034570
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||| |||||    
T  15034658 caggggcggagccaccccccaactagcctgggcactagcccaagctcagcttcaactttctttgtaacaagcccaaccattactagaac 15034570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 50383819 - 50383907
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  50383819 caggggcggagccaccccccagctagcctgggcactggcccaggctcagctccaactttctttgtagcaagcccagccattactagaac 50383907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 2576091 - 2576177
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||| ||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  2576091 caggggcggagccaaccccagctagtctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattacaagaa 2576177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 1585642 - 1585727
Alignment:
Q  130 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||| |||||||||||||||||    ||||||| |||||||||||||||||||||||||| || |||||||| ||||    
T  1585642 aggggcggagccacccccagctagcctgggctagtgcccaggctcagcttcaactttctttgtagcaagccctaccattactagaa 1585727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 25237495 - 25237583
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||| |||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||  |||||| |||||    
T  25237495 caggggcggagccaccccccagctagcctgagcactagcccaggctcagctccaactttctttgtagtaagtccagtcattactagaac 25237583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 32828146 - 32828234
Alignment:
Q  129 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||  ||||||||||| |||||    
T  32828146 caggggcggagccaaaccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaatcccaaccattactagaac 32828234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 9003488 - 9003575
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||| ||||| ||||||||||||| |||||||| ||||| |||||| ||| ||||||||||||||| |||  ||||||||||||    
T  9003488 caggggcgtagccacccccagctagcctaggcactagtccaggctcagctccaattttctttgtagcaagcccagtcattacaagaac 9003575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 52373668 - 52373731
Alignment:
Q  127 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttcttt 190  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
T  52373668 atcaggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttcttt 52373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 31364067 - 31364153
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    ||||||| || ||| |||||||||||||||||| |||||||||||| ||||    
T  31364067 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaaatccaaccattactagaa 31364153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 40969154 - 40969236
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 209  Q
    ||||||||||||| |||||| |||||||||||||    || |||| |||||||||||||||||||||||||||||||||||||    
T  40969154 tcaggggcggagctatcccccagctagcctgggctagtgctcaggctcagcttcaactttctttgtagcaagtccaaccatta 40969236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 6017046 - 6017135
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||| ||| |||| ||||||||||||||||| || || ||||| |||||    
T  6017046 tcaggggcggagccaccccctagctagcatgggcactagcccaggctcaacttctactttctttgtagcaagcccgactattactagaac 6017135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 9809723 - 9809812
Alignment:
Q  127 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||| |||||||||| ||||| || ||||| |||||| |||||| | ||||  |||||||||||||||||||||| |||||||||||||    
T  9809723 atcagaggcggagccacccccatcttgcctgagcactaacccaggcttagctcaaactttctttgtagcaagtccagccattacaagaac 9809812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 49744972 - 49745057
Alignment:
Q  130 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||||||||| || |||||| | ||||||| ||||    
T  49744972 aggggcggagccaaccccagctagtctgggcactagtccaggctcagctccaactttctttataacaagtctagccattactagaa 49745057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 32005846 - 32005926
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 209  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||    
T  32005846 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccatta 32005926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 8901735 - 8901814
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 208  Q
    |||||||||||||| | |||||| | ||||||||||||||||| |||||| ||||||||||||||| ||| ||| |||||    
T  8901735 caggggcggagccaccgccagcttgtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccatt 8901814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 36947447 - 36947520
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 202  Q
    |||||||||||||| ||||||||||| | ||||||||| || | |||||| | |||||||||||||||||||||    
T  36947447 caggggcggagccaaccccagctagcttaggcactagctcaagctcagctcctactttctttgtagcaagtcca 36947520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 41972622 - 41972534
Alignment:
Q  130 aggggcggagccatcccc--agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||| ||||  |||||| ||||||||||||  ||| |||||| ||||||||||||||||||| | ||||||||| |||||    
T  41972622 aggggcggagccacccccccagctaggctgggcactagcttaggctcagctccaactttctttgtagcaagccgaaccattactagaac 41972534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 9694019 - 9694106
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||| || | |||||||||||| ||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| |||||    
T  9694019 caggggcggagtcacctccagctagcctgtgcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaac 9694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 31929229 - 31929141
Alignment:
Q  127 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||| ||||||| ||| ||||||||||||||||| |||||| ||  | |||||  ||||||||||||||||| |||| |||||| ||||    
T  31929229 atcaagggcggaaccacccccagctagcctgggcgctagccaagacttagcttttactttctttgtagcaagcccaatcattactagaa 31929141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 4552132 - 4552203
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  4552132 ccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 4552203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 10715585 - 10715673
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgt-agcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||| |||||| ||||||||||| ||||    
T  10715585 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaa 10715673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 10929355 - 10929443
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgt-agcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||| |||||| ||||||||||| ||||    
T  10929355 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaa 10929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 11827195 - 11827123
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||| |||| |||| ||||||||||| |||||| ||| ||||||||||| ||||| | ||||||| |||||    
T  11827195 ccccagttagcatgggtactagcccaggctcagctccaattttctttgtagtaagtctagccattactagaac 11827123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 2017622 - 2017535
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| | |||| |||||||||||||||||||  | |||||||| ||||    
T  2017622 caggggcggagccaccccccagctagcctgggctagtgcccaggcttagctccaactttctttgtagcaagctctaccattactagaa 2017535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 46645559 - 46645609
Alignment:
Q  165 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||    
T  46645559 gcccaggctcagctccaacttcctttgtagcaagcccaaccattactagaa 46645609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 4728475 - 4728564
Alignment:
Q  127 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||||| |||| ||||||| |||||    ||||||  || ||| ||||||||||||||||||| | ||||||||| ||||    
T  4728475 atcaggggcggagccaccccccagctagcttgggctagtgcccagactcggctccaactttctttgtagcaagccaaaccattactagaa 4728564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 3155597 - 3155553
Alignment:
Q  59 tacaaaaactatttaactatattttatctttagctaaagaaatag 103  Q
    ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  3155597 tacaaaaacaatttaactttattttatcttttgctatagaaatag 3155553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 26278289 - 26278374
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||| | | ||||||| ||||    
T  26278289 caggggcggagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttggagcaagcctagccattactagaa 26278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 37516567 - 37516653
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    ||||||| || | | ||||||||||||||||||||||||||||||| ||||    
T  37516567 caggggcggagccacccccagctagcctgggctagtgcccaggctcggttccaactttctttgtagcaagtccaaccattactagaa 37516653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 53651835 - 53651921
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  53651835 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 53651921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 33179306 - 33179221
Alignment:
Q  132 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||||| | |||||||||||||||||  ||| |||||| ||||||| ||||||||||||||| ||||||| |||||    
T  33179306 gggcggagccatcccccaactagcctgggcactagcttaggctcagctccaactttttttgtagcaagtccagccattactagaac 33179221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 41218569 - 41218480
Alignment:
Q  128 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| |||||| | |||||| |||||||||| ||| ||||||| |||||    
T  41218569 tcaggggcggagccaccccccagctagcctgagcactagcccaggctcagctccgactttccttgtagcaagcccagccattactagaac 41218480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 9600287 - 9600374
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| | | ||||||||||| ||  ||| ||||||| |||||    
T  9600287 caggggcggagccacccccagctagcctgggcactagcccaagctcagctcctattttctttgtagtaatcccagccattactagaac 9600374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 38239388 - 38239486
Alignment:
Q  127 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 225  Q
    |||||||||||||||| ||||||||| |||||||||| | ||||| ||| |||  ||| |||||||||||||| || ||||||| | ||||||| ||||    
T  38239388 atcaggggcggagccacccccagctaacctgggcactcgtccaggctcaacttttactatctttgtagcaagttcagccattactataacctctcgctt 38239486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 41200077 - 41199983
Alignment:
Q  127 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctct 220  Q
    |||||||||||||||| |||| || ||||||| ||||||||||||| |||||||| ||||| ||||||| ||| ||| | ||||| |||||||||    
T  41200077 atcaggggcggagccaccccccagttagcctgagcactagcccaggctcagcttctactttttttgtagtaagcccagcaattactagaacctct 41199983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 53987800 - 53987888
Alignment:
Q  129 caggggcggagccatccc-cagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||||||||||| ||| |||||||| |||||||||| ||||| |||||||||| |||||||||||  ||  |||||||||| |||||    
T  53987800 caggggcggagccacccctcagctagcttgggcactagtccaggctcagcttcaattttctttgtagtcagctcaaccattactagaac 53987888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 41358805 - 41358743
Alignment:
Q  135 cggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    |||||||| ||||||||||||||||| |||| ||||  |||||||| ||||||||||||||||    
T  41358805 cggagccacccccagctagcctgggcgctagtccagactcagcttctactttctttgtagcaa 41358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 54845987 - 54846068
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 210  Q
    |||||| ||| ||| ||||||||||| ||| |||||||||||  ||| |||| |||||||||||||||||| || |||||||    
T  54845987 caggggtggaaccacccccagctagcttggacactagcccagactcaacttctactttctttgtagcaagttcatccattac 54846068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 44047520 - 44047607
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggc-actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| ||||||||||||| | || |||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  44047520 caggggcggagccaccccccagctagcctgggctagta-cccaggctcagctccaactttctttgtagcaagccctaccattactagaa 44047607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 25392009 - 25391922
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| |||||||||| |||||||| || |||||||| ||||    
T  25392009 caggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttcttcgtagcaagccctaccattactagaa 25391922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 44625634 - 44625721
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||    
T  44625634 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaa 44625721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 43447476 - 43447546
Alignment:
Q  130 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtc 200  Q
    |||| |||||||| || ||| |||||||||||||||| |||| |||| ||| ||||| |||||||||||||    
T  43447476 agggacggagccaccctcagttagcctgggcactagctcaggctcagtttctactttttttgtagcaagtc 43447546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 7500915 - 7500967
Alignment:
Q  163 tagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||    
T  7500915 tagcccaggctcggctccaactttctttgtagcaagcccaaccattactagaa 7500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 14461007 - 14461088
Alignment:
Q  131 ggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||  ||||||| |||||||||    ||||||| |||||| ||| ||||||||||||||| || |||||||| ||||    
T  14461007 ggggcggagcctcccccagcgagcctgggct---gcccaggctcagctccaattttctttgtagcaagccctaccattactagaa 14461088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 30956700 - 30956746
Alignment:
Q  57 tatacaaaaactatttaactatattttatctttagctaaagaaatag 103  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30956700 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30956746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 30972512 - 30972558
Alignment:
Q  57 tatacaaaaactatttaactatattttatctttagctaaagaaatag 103  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30972512 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30972558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 12909763 - 12909843
Alignment:
Q  129 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||||| |||| |||||||||||||       |||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  12909763 caggggcggagccaccccccagctagcctgggc-------caggctcagctccaactttctttgtagcaagccctaccattactagaa 12909843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 43700333 - 43700252
Alignment:
Q  134 gcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||| |||||| |||||||| |    || |||| || ||| ||||||||||||||||||| ||||||||||| ||||    
T  43700333 gcggagccacccccagttagcctggactagtgctcaggctcggctccaactttctttgtagcaagcccaaccattactagaa 43700252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 4045 - 4117
Alignment:
Q  144 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 216  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| |||||    
T  4045 ccccagttagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactagaac 4117  T

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Target: scaffold0075 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 11455 - 11542
Alignment:
Q  128 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    ||||||||||||||| ||||||||||||||| |    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||    
T  11455 tcaggggcggagccacccccagctagcctggactagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa 11542  T

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Target: scaffold0075; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 6843 - 6928
Alignment:
Q  131 ggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 215  Q
    |||||||||||  ||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||| || |||||||| ||||    
T  6843 ggggcggagcctcccccaagctagcctgggcactagcccagacttagctccaactttctttgtagcaagccctaccattactagaa 6928  T

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Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 109494 - 109427
Alignment:
Q  129 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 197  Q
    |||||| ||||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||    
T  109494 caggggtggagcca-ccccagctagcttgggcactagtccaggctcagctccaactttctttgtagcaa 109427  T

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