View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_159 (Length: 242)
Name: NF6076_low_159
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_159 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 38544605 - 38544813
Alignment:
| Q |
16 |
gcaaaggggagaatggtggaagagttgggcggtttgataggtannnnnnnagggtaaaaagcacggcctatggagaagaaactaccattagtgagagtga |
115 |
Q |
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| T |
38544605 |
gcaaaggggagaatggtggaagagttgggtggtttgataggtatttttttagggtaaaaagcacggcctatggagaagaaactaccattagtgagagtga |
38544704 |
T |
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| Q |
116 |
gaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtggaaacacaacatataat |
215 |
Q |
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| T |
38544705 |
gaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtggaaacacaacatataat |
38544804 |
T |
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| Q |
216 |
tatggttac |
224 |
Q |
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||||||||| |
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| T |
38544805 |
tatggttac |
38544813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 38352126 - 38352023
Alignment:
| Q |
101 |
cattagtgagagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtgga |
200 |
Q |
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| T |
38352126 |
cattagtcagagtgagaatggatttgttaatggttgcatttccatataggataatgtttttggagttgaagtttgtattatagacaaattcagtagtgga |
38352027 |
T |
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| Q |
201 |
aaca |
204 |
Q |
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|||| |
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| T |
38352026 |
aaca |
38352023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 38548404 - 38548492
Alignment:
| Q |
106 |
gtgagagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagt |
194 |
Q |
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| T |
38548404 |
gtgagagtgaggattgaattttgaattgttgcatttccattaaggtttatgtttgttgagttgaagtttctgttataaacaaattcagt |
38548492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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