View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_162 (Length: 241)
Name: NF6076_low_162
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_162 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 35035534 - 35035356
Alignment:
| Q |
1 |
ttcctacgtttaatacaattcacgtgaagacattctttaccacttnnnnnnnnntctagttacctgtggcaatctgcgatttggtcgtatt--agtttga |
98 |
Q |
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| T |
35035534 |
ttcctacgtttaatacaattcacgtgaagacattctttaccacttaaaaaaaa-tctagttacctgtggcaatctgcgatttggtcgtattctagtttga |
35035436 |
T |
|
| Q |
99 |
tcttattgtgatttagtggtgtcttgttatttgttcttcgattgccattgtgtgctcacaaattgttcacgtgtttgcta |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035435 |
tcttattgtgatttagtggtgtcttgttatttgttcttcgattgccattgtgtgctcacaaattgttcacgtgtttgcta |
35035356 |
T |
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