View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_167 (Length: 240)

Name: NF6076_low_167
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_167
NF6076_low_167
[»] chr6 (10 HSPs)
chr6 (1-238)||(2357869-2358106)
chr6 (51-226)||(2261198-2261373)
chr6 (14-229)||(2340113-2340328)
chr6 (14-229)||(2363197-2363412)
chr6 (18-174)||(14711309-14711465)
chr6 (14-229)||(2351566-2351781)
chr6 (18-175)||(14753379-14753536)
chr6 (38-229)||(2307456-2307647)
chr6 (90-229)||(2369019-2369158)
chr6 (42-153)||(2297361-2297472)
[»] chr3 (1 HSPs)
chr3 (1-228)||(4305882-4306109)
[»] chr4 (1 HSPs)
chr4 (14-229)||(5804156-5804371)
[»] scaffold0408 (1 HSPs)
scaffold0408 (18-175)||(528-684)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2357869 - 2358106
Alignment:
Q  1 gactaatcttaattctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgt 100  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  2357869 gactaatcttaaatctttggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaaccagaaagatttcttaacacttataaagatgt 2357968  T
Q  101 tgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttg 200  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2357969 tgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttg 2358068  T
Q  201 gctaattttttgcattcatttgaaatcttgtattcatc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2358069 gctaattttttgcattcatttgaaatcttgtattcatc 2358106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 226
Target Start/End: Complemental strand, 2261373 - 2261198
Alignment:
Q  51 gatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg-catcactttgagttgttaccatttggaagtggtaga 149  Q
    |||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||  | |||| || || ||||||||||||||||||||||||||||||    
T  2261373 gatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgc-caagggtcaacattttgagttgttaccatttggaagtggtaga 2261275  T
Q  150 aggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaat 226  Q
    ||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || ||||||||    
T  2261274 aggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaat 2261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 2340113 - 2340328
Alignment:
Q  14 tctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg 113  Q
    |||||||||||| |||||||| | || ||||||| | |||||||||||||| ||||| ||||| ||| ||| ||||||||||| |||||||||| ||||     
T  2340113 tctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccactcataaagctgttgatgttagaggt 2340212  T
Q  114 catcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgc 213  Q
     |||| |||||  | |||||||||||||||||||||||||  ||||| |||||||| ||||||||  ||||| ||||||| |   | |||| ||||||||    
T  2340213 aatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagttttttgc 2340312  T
Q  214 attcatttgaaatctt 229  Q
    |||| ||||| |||||    
T  2340313 attcctttgatatctt 2340328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 2363197 - 2363412
Alignment:
Q  14 tctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg 113  Q
    |||||||||||| || || || | |||||||||||| ||||||||||  || ||||| || || |||||||  || ||||||||| ||||| || ||||     
T  2363197 tctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaaccggagaggtttcttacaacgcataaagatattgattttagaggt 2363296  T
Q  114 catcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgc 213  Q
     |||| |||||| | |||||||||||| ||||||||||||||||||| |||||||| || || ||  ||||| ||||||||| |||||||| ||||||||    
T  2363297 aatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgc 2363396  T
Q  214 attcatttgaaatctt 229  Q
    |||| |||||||||||    
T  2363397 attcctttgaaatctt 2363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 14711465 - 14711309
Alignment:
Q  18 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 117  Q
    |||||||||||||| || | || ||||||| |||||||||| ||||| |||||||| ||||||||||  ||||||||||||||||||||| ||||  |||    
T  14711465 tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc 14711366  T
Q  118 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 174  Q
    | |||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711365 attttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 2351566 - 2351781
Alignment:
Q  14 tctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg 113  Q
    |||||||||||| ||||| || | || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||| ||||     
T  2351566 tctttggaagattcaaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgttagaggt 2351665  T
Q  114 catcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgc 213  Q
     |||| |||||  |  ||||||||||||||||||||||||  ||||| | |||||||||||||||  ||||  ||||||| | | | || | ||||||||    
T  2351666 aatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgc 2351765  T
Q  214 attcatttgaaatctt 229  Q
    |||| ||||| |||||    
T  2351766 attcctttgatatctt 2351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 14753536 - 14753379
Alignment:
Q  18 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 117  Q
    |||||||||||||| |||| ||  |||||| |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  14753536 tggaagatccaaactgaccctagcgtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 14753437  T
Q  118 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 175  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753436 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 2307456 - 2307647
Alignment:
Q  38 taatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccattt 137  Q
    |||| ||||| | |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| | ||   | | |||| | | || ||||||    
T  2307456 taatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccattt 2307555  T
Q  138 ggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 229  Q
    ||||||||||||||||| || || ||||||||  |||||||  ||||| ||||||| ||| | |||| |||||||||||| ||||| |||||    
T  2307556 ggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatatctt 2307647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 2369019 - 2369158
Alignment:
Q  90 cataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgc 189  Q
    |||||||| ||||||||| |||| ||||| |||||| | |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| |||    
T  2369019 cataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgc 2369118  T
Q  190 atttaattttggctaattttttgcattcatttgaaatctt 229  Q
    |||||| |||||||| |||||||||||| |||||||||||    
T  2369119 atttaactttggctagttttttgcattcctttgaaatctt 2369158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 2297361 - 2297472
Alignment:
Q  42 gtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaa 141  Q
    |||||||| ||||||||||| |||||||||||||| ||||||| |||| | |||||||||||| || | || ||  | ||||||||||| ||||||||||    
T  2297361 gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa 2297460  T
Q  142 gtggtagaagga 153  Q
    |||| |||||||    
T  2297461 gtggaagaagga 2297472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4305882 - 4306109
Alignment:
Q  1 gactaatcttaattctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgt 100  Q
    |||||||| | | ||| ||||||||||| || || | ||| |||||||  || || |||||||| ||||| ||| | |||||||  |||||||||| |||    
T  4305882 gactaatcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaaccagaacggtttcttactactcataaaggtgt 4305981  T
Q  101 tgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttg 200  Q
    |||||||   || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||| ||||||||  ||||    
T  4305982 tgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttg 4306081  T
Q  201 gctaattttttgcattcatttgaaatct 228  Q
    |||| |||||||||||| ||||||||||    
T  4306082 gctagttttttgcattcctttgaaatct 4306109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 5804371 - 5804156
Alignment:
Q  14 tctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg 113  Q
    ||||||||||||||||||||| | || ||||||| |  |||||||||| ||||| || ||||| |||||||  |||||||||||| |||||||| | ||     
T  5804371 tctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagccagaaaggtttcttacaactcataaagatattgatgttaggggt 5804272  T
Q  114 catcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgc 213  Q
     |||| |||||  |   |||||||||||||||||||||||  ||||| ||||||| |||||||||  ||||| ||||||| | | | |||| ||||||||    
T  5804271 aatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgc 5804172  T
Q  214 attcatttgaaatctt 229  Q
    |||| ||||| |||||    
T  5804171 attcctttgatatctt 5804156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 528 - 684
Alignment:
Q  18 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 117  Q
    |||||||||||||| |||| ||  ||| || |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  528 tggaagatccaaactgaccctagcgtt-ggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 626  T
Q  118 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 175  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  627 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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