View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_170 (Length: 239)
Name: NF6076_low_170
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_170 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 35797490 - 35797297
Alignment:
| Q |
18 |
atgccaaccactagatgaactctaaatggattctaaatcggtattcttacttttgaagatccttatgtatccttttgttgttcaacaattgaaactatgg |
117 |
Q |
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| T |
35797490 |
atgccaaccactagatcaactctaaatggatcctaaatcggtattcttacttttgaagatccttatgtatccttttgttgttcaacaattgaaactatgg |
35797391 |
T |
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| Q |
118 |
atatttatttttctcatgtccgtttgcttaccatattcggaactgagaagtggagatttaagttggtcatatatcttccatttcctctacaaag |
211 |
Q |
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| T |
35797390 |
atatttatttttctcatgtccgtttgcttaccatattcggaactgagaagtggagatttaagttggtcatatatcttccatttcctctacaaag |
35797297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 35797274 - 35797244
Alignment:
| Q |
209 |
aaggactttgtcttctcaaatctactagctt |
239 |
Q |
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| T |
35797274 |
aaggactttgtcttctcaaatctactagctt |
35797244 |
T |
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