View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_179 (Length: 237)
Name: NF6076_low_179
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_179 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 35368774 - 35368888
Alignment:
| Q |
109 |
catttcatgatattctttggacgcggcgacgagagtaataattttttc-ggatcatatttaattttttgggcatattacaacttgttgaaacactatatt |
207 |
Q |
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| T |
35368774 |
catttcatgatattctttggacgcggcgacgagagtaataattttttctggatcatatttaattttttgggcatattacaacttgttgaaacactatatt |
35368873 |
T |
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| Q |
208 |
ttgggtccaagtttt |
222 |
Q |
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| T |
35368874 |
gtgggtccaagtttt |
35368888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 35372111 - 35372204
Alignment:
| Q |
129 |
acgcggcgacgagagtaataattttt-tcggatcatatttaattttttgggcatattacaacttgttgaaacactatattttgggtccaagtttt |
222 |
Q |
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| T |
35372111 |
acgcggcggcgagagtaataattttgcttggatcatgttgaactttttggg-atattacaacttgttgaaacactatattgtgggtcccagtttt |
35372204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 35368679 - 35368725
Alignment:
| Q |
12 |
gattcgattcatttt-gctatgaatatttattggttagtcaaaggcc |
57 |
Q |
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| T |
35368679 |
gattcgattcatttttgctatgaatatttattggttattcaaaggcc |
35368725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 35372014 - 35372046
Alignment:
| Q |
17 |
gattcattttgctatgaatatttattggttagt |
49 |
Q |
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| T |
35372014 |
gattcattttgctatgaatttttattggttagt |
35372046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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