View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_188 (Length: 228)
Name: NF6076_low_188
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_188 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 51185534 - 51185695
Alignment:
| Q |
34 |
ctttgctttcatcaaaactttgttcactctttttcttgtacttgcctgcgt-actacattatgcatggcttcctcaaaacgctattttcctcatggttct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
51185534 |
ctttgctttcatcaaaactttgttcactcttttccttgtacttgtctgcgttactcgattatacatggcttactcaaaaccctattttcctcatggttct |
51185633 |
T |
|
| Q |
133 |
cattctcaaggagaaaataagaggatgaagttggaacattcttctcgagcgccgacaacaac |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
51185634 |
cattctcaaggagaaaataagaggatgaaattggaacattcttctcgaaagccaacaacaac |
51185695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51180646 - 51180715
Alignment:
| Q |
1 |
tatgataagtatcctagctaataattagtaccgctttgctttcatcaaaactttgttcactctttttctt |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51180646 |
tatgataagtatcctagctaataattagtaccgctttgctttcatcaaaactttgttcactctttttctt |
51180715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University