View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_189 (Length: 227)
Name: NF6076_low_189
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_189 |
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| [»] chr5 (7 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 29417853 - 29417632
Alignment:
| Q |
6 |
agagatgtgtggctgcgttctcgtcaaattcaaataaacaaaattttaaggtaagaagaagccaatcacatattcctaatgatctttccttctctattct |
105 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417853 |
agagatgtgtggctgcgttctcgtcaaagtcaaataaacaaaattgtaaggtaagaagaagccaatcacatattcctaatgatctttccttctctattct |
29417754 |
T |
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| Q |
106 |
ctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgtaccgctat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417753 |
ttccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgtaccgctat |
29417654 |
T |
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| Q |
206 |
catttcgtaacaaaggatcatt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
29417653 |
catttcgtaacaaaggatcatt |
29417632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 24654504 - 24654725
Alignment:
| Q |
6 |
agagatgtgtggctgcgttctcgtcaaattcaaataaacaaaattttaaggtaagaagaagccaatcacatattcctaatgatctttccttctctattct |
105 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24654504 |
agagatgtgtggctgcgttgtcgtcaaattcaaataaacagaatgtaaaggtaagaagaagccaatcacatattcctaatgatctttccttctctattct |
24654603 |
T |
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| Q |
106 |
ctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgtaccgctat |
205 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24654604 |
ttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatggtcccttttattagataacccttatttcatgaccatgtaccgctat |
24654703 |
T |
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| Q |
206 |
catttcgtaacaaaggatcatt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
24654704 |
catttcgtaacaaaggatcatt |
24654725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 16487703 - 16487538
Alignment:
| Q |
62 |
agaagccaatcacatattcctaatgatctttccttctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggt |
161 |
Q |
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|||||||| |||||||| |||||||||||| ||||||| ||||||| ||| ||||||| ||| | |||||| | ||||| || ||||| |||||||||| |
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| T |
16487703 |
agaagccagtcacatatatctaatgatcttttcttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggt |
16487604 |
T |
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| Q |
162 |
cccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcatt |
227 |
Q |
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| T |
16487603 |
cgcttttatttgataacccacatttcatgactatgtatcgcaataatctcttaacaaaggatcatt |
16487538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 42835523 - 42835386
Alignment:
| Q |
61 |
aagaagccaatcacatattcctaatgatctttccttctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatgg |
160 |
Q |
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||||| |||||| ||||| ||||||||||||| ||||| ||||||||||||| | |||| ||| | |||||||| ||||| || ||||| ||||||||| |
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| T |
42835523 |
aagaaaccaatctcatatacctaatgatcttttcttctttattctctccaaaatgtctattaaatctttgaagcgatttggatgcgtacacaaatcatgg |
42835424 |
T |
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| Q |
161 |
tcccttttattagataacccttatttcatgaccatgta |
198 |
Q |
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| T |
42835423 |
tcccttttgtttgataatctttatttcatgactatgta |
42835386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 42797219 - 42797112
Alignment:
| Q |
83 |
aatgatctttccttctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataaccctt |
182 |
Q |
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|||||||||| ||||||||||||||| ||||||||||| ||| | |||||||| ||| | | ||||| ||||||||||| ||| |||| ||||| ||| |
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| T |
42797219 |
aatgatcttttcttctctattctctcaaaattacctattaaatctttgaagcgattttgatatgtacttaaatcatggttcctcgtattccataactctt |
42797120 |
T |
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| Q |
183 |
atttcatg |
190 |
Q |
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|||||||| |
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| T |
42797119 |
atttcatg |
42797112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 42782270 - 42782382
Alignment:
| Q |
84 |
atgatctttccttctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataaccctta |
183 |
Q |
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||||| || ||||||| ||||| || |||||||| || ||| | |||||||| ||||| || |||| |||||||||||| ||| |||| || || |||| |
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| T |
42782270 |
atgatattaccttctcaattctatcaaaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctatttgaaaatccttt |
42782369 |
T |
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| Q |
184 |
tttcatgaccatg |
196 |
Q |
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|||||||| |||| |
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| T |
42782370 |
tttcatgaacatg |
42782382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 40415080 - 40415181
Alignment:
| Q |
97 |
ctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatg |
196 |
Q |
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|||||||||| | ||||||||||| ||| | |||||| | ||||| |||||| |||||||| || |||||||| ||||| | ||||||||||| ||| |
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| T |
40415080 |
ctctattctcccaaaattacctatcaaatctttgaagaggtttggatgtgtatgcaaatcatgatcgcttttatttgataattcatatttcatgactatg |
40415179 |
T |
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| Q |
197 |
ta |
198 |
Q |
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|| |
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| T |
40415180 |
ta |
40415181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 9581 - 9678
Alignment:
| Q |
101 |
attctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgta |
198 |
Q |
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|||||||||||||| ||| | ||| | ||||| || ||| |||||||||||||||||||||| | ||||| || |||||| ||||||||| |||||| |
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| T |
9581 |
attctctccaaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgta |
9678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 21379408 - 21379306
Alignment:
| Q |
94 |
cttctctattctctccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgacc |
193 |
Q |
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|||||||||||| || || |||||| | ||| | |||||||| ||||| || || | |||||||||||| || ||||| || ||| |||||||||||| | |
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| T |
21379408 |
cttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaac |
21379309 |
T |
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| Q |
194 |
atg |
196 |
Q |
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||| |
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| T |
21379308 |
atg |
21379306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 16920098 - 16920184
Alignment:
| Q |
112 |
attacctataaaaccattgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgta |
198 |
Q |
| |
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||||||| ||||| | |||||||| ||||| || |||| |||||||||| || |||| || || |||| | |||||||||||||||| |
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| T |
16920098 |
attacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgta |
16920184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 29353364 - 29353295
Alignment:
| Q |
128 |
ttgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgt |
197 |
Q |
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|||||||||||||| || ||| ||||| ||||||| || ||||| || |||||| ||||||| ||||||| |
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| T |
29353364 |
ttgaagcgttttggatgcgtaaataaaacatggtctctcttatttgaaaaccctaatttcatcaccatgt |
29353295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 44142359 - 44142275
Alignment:
| Q |
127 |
attgaagcgttttggttgtgtacataaatcatggtcccttttattagataacccttatttcatgaccatgtaccgctatcatttc |
211 |
Q |
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|||||||| |||||| || |||| |||||||||||| | || || || ||| || |||||||||||||||||||| | |||||| |
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| T |
44142359 |
attgaagctttttggatgcgtacgcaaatcatggtccatcttgtttgaaaactctcatttcatgaccatgtaccgcaaccatttc |
44142275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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