View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_19 (Length: 537)
Name: NF6076_low_19
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_19 |
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| [»] chr3 (11 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 5 - 537
Target Start/End: Original strand, 35921908 - 35922442
Alignment:
| Q |
5 |
gatggacatcatcatattatcaagagtaaagttcaaatgatgtcaatgaccaggtttttgcatgtgattttataaatcaaaagaaaaataaagttcaata |
104 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921908 |
gatggtcataatcatattatcaagagtaaagttcaaatgatgtcaatgaacaggtttttgcatgtgattttataaatcaaaagaaaaataaagttcaata |
35922007 |
T |
|
| Q |
105 |
tcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaatcaagtataattaataatctatttat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922008 |
tcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaatcaagtataattaataatctatttat |
35922107 |
T |
|
| Q |
205 |
aaacaaatattaaatagacaatgacacattaaagaacatnnnnnnntagaaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35922108 |
aaacaaatattaaatagacaatgacacattaaagaacataaaaaaatagaaaatgcatacaaaagaacaaaagttaactgtagaaaacagtttctgatgc |
35922207 |
T |
|
| Q |
305 |
a--ttttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcagga |
402 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922208 |
attttttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcagga |
35922307 |
T |
|
| Q |
403 |
tcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtg |
502 |
Q |
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| T |
35922308 |
tcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtg |
35922407 |
T |
|
| Q |
503 |
gtgcaacataagcagccgaagaaaaaagtgttttc |
537 |
Q |
| |
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|||||||||||||||| ||| || || |||||||| |
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| T |
35922408 |
gtgcaacataagcagcagaaaaagaatgtgttttc |
35922442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 307 - 537
Target Start/End: Original strand, 35941077 - 35941307
Alignment:
| Q |
307 |
tttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaa |
406 |
Q |
| |
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|||||||||||||| ||||| |||| ||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35941077 |
tttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaa |
35941176 |
T |
|
| Q |
407 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtggtgc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941177 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtggtgc |
35941276 |
T |
|
| Q |
507 |
aacataagcagccgaagaaaaaagtgttttc |
537 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
35941277 |
aacataagcagccgaagaaaaaagtgttttc |
35941307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 308 - 537
Target Start/End: Original strand, 35915944 - 35916173
Alignment:
| Q |
308 |
ttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaac |
407 |
Q |
| |
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||||||||||||| | ||||| || ||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915944 |
ttttacctccattgaaccacagtactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaac |
35916043 |
T |
|
| Q |
408 |
tgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtggtgca |
507 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35916044 |
tgtgacatagcctgaatattggtcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctcttgaggtggtgca |
35916143 |
T |
|
| Q |
508 |
acataagcagccgaagaaaaaagtgttttc |
537 |
Q |
| |
|
||||||||||| ||| || || |||||||| |
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| T |
35916144 |
acataagcagcagaaaaagaatgtgttttc |
35916173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 251 - 502
Target Start/End: Original strand, 35911500 - 35911751
Alignment:
| Q |
251 |
tagaaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataaga |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||| |||| ||| |||||||| |||| |
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| T |
35911500 |
tagaaaatgcctacaaaagaacaaaagttaactgtgaaaaacagtttctaatgcaatttttacctccattgagccataatactaaaggtttagtggaaga |
35911599 |
T |
|
| Q |
351 |
gttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggt |
450 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35911600 |
gttatatggagactccacaaaataatagaaaagttctctaccagcctcaggatcaactgtgacatagcctgaatattggtcaaaatttaccccatagggt |
35911699 |
T |
|
| Q |
451 |
tgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtg |
502 |
Q |
| |
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||||||||||||||| | |||||||||||| | ||||| |||||||||||| |
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| T |
35911700 |
tgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgaggtg |
35911751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 288 - 537
Target Start/End: Original strand, 35935508 - 35935757
Alignment:
| Q |
288 |
aaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttct |
387 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||||||||| ||| |||||||| ||||||||| |||||| |||||||||||||| |||||| || |
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|
| T |
35935508 |
aaaacagtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgct |
35935607 |
T |
|
| Q |
388 |
cttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtctta |
487 |
Q |
| |
|
||||| |||||||| ||||| || ||||| || || ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35935608 |
cttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctta |
35935707 |
T |
|
| Q |
488 |
gctcctcttgaggtggtgcaacataagcagccgaagaaaaaagtgttttc |
537 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
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| T |
35935708 |
gctcctcttgaggtgctgcaacataagcagcagaagaagaaagtgttttc |
35935757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 254 - 500
Target Start/End: Original strand, 35928839 - 35929083
Alignment:
| Q |
254 |
aaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataagagtt |
353 |
Q |
| |
|
||||||||||||||| ||||||||||| | | | |||| ||||| || ||| ||| |||||||||| |||||||| | ||| |||||||| ||||||| |
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|
| T |
35928839 |
aaaatgcatacaaaataacaaaagttatcagcataaaaaagttt--gaggcaatttatacctccattgagccacaaaactaaaggtttagtggaagagtt |
35928936 |
T |
|
| Q |
354 |
atgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttga |
453 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35928937 |
atatggagactccacaaaataatagaaaagctctcttccagcctcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttga |
35929036 |
T |
|
| Q |
454 |
ccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg |
500 |
Q |
| |
|
|||||||||||| | |||||||||||| | |||||| |||||||||| |
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| T |
35929037 |
ccaggcaatgtgtcaatcttgtcagcttgccttagcccctcttgagg |
35929083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 35911133 - 35911260
Alignment:
| Q |
80 |
atcaaaagaaaaataaagttcaatatcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaat |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| |||||| |||||||| |||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
35911133 |
atcaaaagaaaaataatattcaatatcaagtgatgtttgtctttaggttaaactatattatcat-tttcagtactacgaaaatgaacttatgtcatcaat |
35911231 |
T |
|
| Q |
180 |
caagtataattaataatctatttataaac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35911232 |
caagtataattaataatctatttataaac |
35911260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 35915620 - 35915749
Alignment:
| Q |
75 |
tataaatcaaaagaaaaataaagttcaatatcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtca |
174 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||||||| | |||||| |||||||| ||| |||||||||||||||||||| | |||||||| |
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|
| T |
35915620 |
tatatatcaaaagaaaaataatattcaaaatcaagtgatatttttctttaggttaaactatattat---gtttcactactatgaaaatgtagttatgtca |
35915716 |
T |
|
| Q |
175 |
tcaatcaagtataattaataatctatttataaa |
207 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| |
|
|
| T |
35915717 |
tcaatcaaatataactaataatctatatataaa |
35915749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 35928659 - 35928700
Alignment:
| Q |
141 |
catgtttcactactatgaaaatgaacttatgtcatcaatcaa |
182 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
35928659 |
catgtttgactactatgaaaatcaagttatgtcatcaatcaa |
35928700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 35915873 - 35915901
Alignment:
| Q |
254 |
aaaatgcatacaaaagaacaaaagttaac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35915873 |
aaaatgcatacaaaagaacaaaagttaac |
35915901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 35935217 - 35935257
Alignment:
| Q |
142 |
atgtttcactactatgaaaatgaacttatgtcatcaatcaa |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
35935217 |
atgtttcactactatgaaaatgaagttatgttatcgatcaa |
35935257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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