View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_191 (Length: 226)
Name: NF6076_low_191
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_191 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 9058107 - 9057915
Alignment:
| Q |
29 |
tacaagtttatatattatgtttttataactactttaggacttataaaatatcaatattttgggtctttcaatgttcagatttaatgtcttaccatatctg |
128 |
Q |
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| T |
9058107 |
tacaagcttatatattatgtttttataactactttaggacttataaaatatcaatattttgggtccttcaatgttcagatttaatgtcttaccatatctg |
9058008 |
T |
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| Q |
129 |
aaatatatgattgacgccatattgactcaagtgtagaatttatcattcatgttagaaattaga------aattaaaaccaaagaattgatgat |
215 |
Q |
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| T |
9058007 |
aaatatatgattgacgccatattgactcaagtgtagaatttaccattcatgttagaaattagaaaaggtaattaaaaccaaagaattcatgat |
9057915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 9128374 - 9128194
Alignment:
| Q |
41 |
tattatgtttttataactactttaggacttataaaatatcaatattttgggtctttcaatgttcagatttaatgtcttaccatatctgaaatatatgatt |
140 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9128374 |
tattatgtttttataactactctaggacttataaaatatcaatattttgggtccttcaatgttcagatttaatgtcctaccatatctgaaatatatgatt |
9128275 |
T |
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| Q |
141 |
gacgccatattgactcaagtgtagaatttatcattcatgttagaaattaga------aattaaaaccaaagaattgatgat |
215 |
Q |
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| T |
9128274 |
gacgccatattgactcaagtgtagaatttatcattcatgttagaaattagaaaaggtaattaaaaccaaagaattcatgat |
9128194 |
T |
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