View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_2 (Length: 788)
Name: NF6076_low_2
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 576; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 11 - 651
Target Start/End: Original strand, 35922414 - 35923060
Alignment:
| Q |
11 |
cataggcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcatt |
110 |
Q |
| |
|
|||| ||||| ||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
35922414 |
cataagcagcagaaaaagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttgggaggattctgagattttctagacagaataaactcatt |
35922513 |
T |
|
| Q |
111 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35922514 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttc |
35922613 |
T |
|
| Q |
211 |
tcaacttggtttcaacatatcataagtttctaactatttatagatgaaaaagtgacaattttgcaggacttatttggttgtgcttattggagtcatgtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35922614 |
tcaacttggtttcaacatatcataagtttctaacaatttatagatgaaaaagtgacaattttggaggacttatttggttgtgcttattggagtcatgtga |
35922713 |
T |
|
| Q |
311 |
atgaaacaagtgttaacagcacaattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttccctttttctagaatca |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35922714 |
atgaaacaagtgttaacagtacaattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttccctttttctagaatca |
35922813 |
T |
|
| Q |
411 |
tggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggtttatgcagtgtct |
510 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35922814 |
tggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggtttatgcagtgtct |
35922913 |
T |
|
| Q |
511 |
tcattctagtttctaagagcatctgtaattgggttactgggaat------atgcttggtcgtgccaggttctatatgttatatcttaattaaataagtaa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35922914 |
tcattctagtttctaagagcatctgtaattgggttactgggaatatgctcatgcttgctcgtgccaggttctatatgttatatcttaattaaataagtaa |
35923013 |
T |
|
| Q |
605 |
ttttctctatataacaagcaggcggccacaatgagattaaactctat |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35923014 |
ttttctctatataacaagcaggcggccacaatgagattaaactctat |
35923060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 32 - 494
Target Start/End: Original strand, 35911779 - 35912247
Alignment:
| Q |
32 |
gtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagc |
131 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || ||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
35911779 |
gtgttttcaatgcatcttcctcttcccatgaaagagtcttaggaggattctgtgaggttctagacagaataaactcaacaagtttatcagcttgactagc |
35911878 |
T |
|
| Q |
132 |
tttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatc |
231 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
35911879 |
tttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttcttcatcttgttctcaacttggcttcaatatatc |
35911978 |
T |
|
| Q |
232 |
ataagtttctaactatttatagatgaaaa--agtgacaattttgca-ggacttatttggttgtgcttattggagtcatgtgaatgaaaca--agtgttaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || || ||||||||| |||| | || ||||| |
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|
| T |
35911979 |
ataagtttctaactatttatagatgaaaaacagtggcaattttgcagggacttatttggttgtgcttgtttgaatcatgtgaaagaaataagagagttaa |
35912078 |
T |
|
| Q |
327 |
cagcacaattgaccaatgactatgcaatattgatcagccggctga------atgtaagtgattttccttgtttccctttttctagaatcatggtatcaag |
420 |
Q |
| |
|
||| || |||||||||||| |||| |||| |||||||||||| | |||| |||| | ||||||||| ||||||||||||||| |||||||| |
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|
| T |
35912079 |
cagtactgttgaccaatgaccatgc---attggtcagccggctgaccgaccaggtaatggattgttcttgtttccgtttttctagaatcat-gtatcaag |
35912174 |
T |
|
| Q |
421 |
gtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgt |
494 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
35912175 |
ttatttaacattttagtactatgtgattaactttgaaagttaatg-gatgtttgttcctctaacttattgttgt |
35912247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 35916145 - 35916459
Alignment:
| Q |
11 |
cataggcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcatt |
110 |
Q |
| |
|
|||| ||||| ||| || || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35916145 |
cataagcagcagaaaaagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttaggaggattctgagattttctagacagaataaactcatt |
35916244 |
T |
|
| Q |
111 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaag---gctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916245 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaaccttcttcatcttg |
35916344 |
T |
|
| Q |
208 |
ttctcaacttggtttcaacatatcataagtttctaactatttatagatgaaaa--agtgacaattttgcaggacttatttggttgtgcttattggagtca |
305 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| || |
|
|
| T |
35916345 |
ttctcaacttggtttcaatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttcttgttggagcca |
35916444 |
T |
|
| Q |
306 |
tgtgaatgaaacaag |
320 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
35916445 |
tgtgaaagaaacaag |
35916459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 35941279 - 35941491
Alignment:
| Q |
11 |
cataggcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcatt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35941279 |
cataagcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagacagaataaactcatt |
35941378 |
T |
|
| Q |
111 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35941379 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttctccatcttgttc |
35941478 |
T |
|
| Q |
211 |
tcaacttggtttc |
223 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
35941479 |
tcaacttgatttc |
35941491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 35935729 - 35935940
Alignment:
| Q |
11 |
cataggcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcatt |
110 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||| |
|
|
| T |
35935729 |
cataagcagcagaagaagaaagtgttttcaatgcttctccctcttcccaagaaagagtcttgggaggattctgtgattttctagacagaaaaagctcatc |
35935828 |
T |
|
| Q |
111 |
gagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35935829 |
aagtttatcagcttgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatcttgttc |
35935928 |
T |
|
| Q |
211 |
tcaacttggttt |
222 |
Q |
| |
|
| || ||||||| |
|
|
| T |
35935929 |
ttaagttggttt |
35935940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 41 - 255
Target Start/End: Original strand, 35929116 - 35929329
Alignment:
| Q |
41 |
atgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagctttgctata |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35929116 |
atgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctata |
35929215 |
T |
|
| Q |
141 |
tggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatcataagtttc |
240 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| | |||||| |
|
|
| T |
35929216 |
tggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttcttcatcttattctcaacttggtttccatatatc-ttagtttc |
35929314 |
T |
|
| Q |
241 |
taactatttatagat |
255 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
35929315 |
tatctatttatagat |
35929329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 35936130 - 35936245
Alignment:
| Q |
388 |
ttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactta |
487 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
35936130 |
ttgtttccctgtttgtagaatcat---aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaactta |
35936226 |
T |
|
| Q |
488 |
ttgttgtggtttatgcagt |
506 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
35936227 |
ttgttgtggttgatgcagt |
35936245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 504
Target Start/End: Original strand, 35929457 - 35929593
Alignment:
| Q |
369 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg--- |
465 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
35929457 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
35929553 |
T |
|
| Q |
466 |
-atatatttgttcctctaacttattgttgtggtttatgca |
504 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
35929554 |
aatatattttgtcctctaacttattgttgccgtttatgca |
35929593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 35941655 - 35941769
Alignment:
| Q |
387 |
cttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactt |
486 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
35941655 |
cttgttttcctttttctagaatcatg-tatcaagttatttaacaatttagcactttgtaattaacttt----gttaattatatattttttcctctaactt |
35941749 |
T |
|
| Q |
487 |
attgttgtggtttatgcagt |
506 |
Q |
| |
|
||| || || || ||||||| |
|
|
| T |
35941750 |
atttttatgattgatgcagt |
35941769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 35916550 - 35916641
Alignment:
| Q |
371 |
aatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg |
465 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
35916550 |
aatgtaagggattgtcattgtttccctttttctagaatcat---atcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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