View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_202 (Length: 219)
Name: NF6076_low_202
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_202 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1049583 - 1049380
Alignment:
| Q |
1 |
ataccggctttgagcatgttatatttgagcaaggtaatgctaaaattatgctaggtctatgttaaaaactgatgatcttagccaattgaggttgacacag |
100 |
Q |
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| T |
1049583 |
ataccgcctttgagcatgttatatttgagctaggtaatgctaaaattatgctaggtctatgttaaaaattgatgatcttagccaattgaggttgacacag |
1049484 |
T |
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| Q |
101 |
atggttagaccttccggtcacatttacttacataataaataatgatatgacgaaatagatacatacctgaatttgaaacccttccagcatgccaaatttg |
200 |
Q |
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| T |
1049483 |
atggttagaccttccggtcacatttatttacataataaataatgatatgacgaaatagatacatacctgaatttgaaacccttccagcatgccaaatttg |
1049384 |
T |
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| Q |
201 |
acag |
204 |
Q |
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|||| |
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| T |
1049383 |
acag |
1049380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 1043484 - 1043286
Alignment:
| Q |
15 |
catgttatatttgagcaaggtaatgctaaaattatgctaggtctatgttaaaaactgatgatcttagccaattgaggttgacacagatggttagaccttc |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
1043484 |
catgttatatttgagctaggtaatgctaaaattatgctaggtctatgttaaaaattgatgatcttaaccaatttgggttgacattgatggttagaccttc |
1043385 |
T |
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| Q |
115 |
cggtc------acatttacttacataataaataatgatatgacgaaataga---tacatacctgaatttgaaacccttccagcatgccaaatttgacag |
204 |
Q |
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| T |
1043384 |
agctcactccaacttttattttcataataaataatgatatgatgaaataaacatgatatacctgaatttgaaactcttccaacatgccaaatctgacag |
1043286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 1049641 - 1049590
Alignment:
| Q |
153 |
aaatagatacatacctgaatttgaaacccttccagcatgccaaatttgacag |
204 |
Q |
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||||| ||| ||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
1049641 |
aaataaataaatagctgaatttgaaactcttccaacatgccaaatttgacag |
1049590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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