View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_204 (Length: 214)
Name: NF6076_low_204
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_204 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 8244959 - 8244845
Alignment:
| Q |
14 |
catgaagcttgtttggtctccagaaactgccttaaaagcttacatagacactgttaaatccgtaagcaccgttcaacctcaacaacaagtaagatcaatc |
113 |
Q |
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| T |
8244959 |
catgaagcttgtttggtctccagaaactgccttaaaagcttacatagacactgttaaatccgtaagcaccgttcaacctcaacaacaagtaagatcaatc |
8244860 |
T |
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| Q |
114 |
acatattcatacttg |
128 |
Q |
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||||||||||||||| |
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| T |
8244859 |
acatattcatacttg |
8244845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 8249028 - 8248914
Alignment:
| Q |
14 |
catgaagcttgtttggtctccagaaactgccttaaaagcttacatagacactgttaaatccgtaagcaccgttcaacctcaacaacaagtaagatcaatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8249028 |
catgaagcttgtttggtctccagaaactgccttaaaagcttacatagacactgttaaatccgtaagcaccgttcaacctcaacaacaagtaagatcaatc |
8248929 |
T |
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| Q |
114 |
acatattcatacttg |
128 |
Q |
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||||||||||||||| |
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| T |
8248928 |
acatattcatacttg |
8248914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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