View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_205 (Length: 212)
Name: NF6076_low_205
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 22382515 - 22382702
Alignment:
| Q |
14 |
taatactgcaatgaacaaaatggcactgagaaacagaaatgctttcttcttccccaaaagc------acttgaggttgtgatcgcgtctgaattccctcc |
107 |
Q |
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| T |
22382515 |
taatactgcaatgaacaaaattgcacagagaaacaaaaatgcttttttcttccccaaaagcacaagcacttgaggttgtaatcgcgtctgaattccctcc |
22382614 |
T |
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| Q |
108 |
tctggcagtgcattgcgtttgagatcgtgcaaaacgtcctcaaccatctcatccctaagcttcttataccgaggatcagcattgtcca |
195 |
Q |
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| T |
22382615 |
tttggcagagcattgcgtttgagatcgtgcaaaatgtcctcaaccatctcatccctaagcttcttataccgaggatcagcattgtcca |
22382702 |
T |
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Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 30791317 - 30791138
Alignment:
| Q |
13 |
ataatactgcaatgaacaaaatggcactgagaaacagaaatgctttcttcttccccaaaagcacttgaggttgtgatcgcgtctgaattccctcctctgg |
112 |
Q |
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| T |
30791317 |
ataatgctgcaatgaaccaaatgacac--agaaacaaaaatggtttcttcttatccaaaagcacttgaggttgcgatcgcgtctgaattccctcctctgg |
30791220 |
T |
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| Q |
113 |
cagtgcattgcgtttgagatcgtgcaaaacgtcctcaaccatctcatccctaagcttcttataccgaggatcagcattgtcca |
195 |
Q |
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| T |
30791219 |
cagtgcattgtgtttgagatcttgcaaaacatattcaactatctcatccctaagcttcttat-ccgaggatcagcatagtcca |
30791138 |
T |
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Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 12924369 - 12924550
Alignment:
| Q |
14 |
taatactgcaatgaacaaaatggcactgagaaacagaaatgctttcttcttccccaaaagcacttgaggttgtgatcgcgtctgaattccctcctctggc |
113 |
Q |
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||||| |||||||||||||||| || ||||||||||||| ||||||||||| | ||| |||||||||||| ||| || |||||||| |||||| |||| |
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| T |
12924369 |
taatagtgcaatgaacaaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttgaggttgcgattgcatctgaatttcctcctttggc |
12924468 |
T |
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| Q |
114 |
agtgcattgcgtttgagatcgtgcaaaacgtcctcaaccatctcatccctaagcttcttataccgaggatcagcattgtcca |
195 |
Q |
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| T |
12924469 |
agtgcatcgcgtctgagatcttgcaaaacatactcaattatctcatccctaagcttcttatacggaggatcagcattgtcca |
12924550 |
T |
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