View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_207 (Length: 211)
Name: NF6076_low_207
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_207 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 2677314 - 2677142
Alignment:
| Q |
19 |
aatattataaagagaaaggtttttgagtttcaaacaaataaaaggtttcttatggtataaacaagttttgttaatacctcttattataaaatgcactgtg |
118 |
Q |
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| T |
2677314 |
aatattataaagagaaaggtttttgagtttcaaacaaataaaaggtttcttatggtataaacaagttttgttaatacctcttattataaaatgcactgtg |
2677215 |
T |
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| Q |
119 |
tatgactaatatggagaatagtggaaaaactaaagtgccacacggttccaatactttcgacgaaattttaaat |
191 |
Q |
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| T |
2677214 |
tatgactaatatggagaatagtggaaaaactaaagtgtcacacggttccaatactttggacgaaattttaaat |
2677142 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 3053030 - 3053091
Alignment:
| Q |
21 |
tattataaagagaaaggtttttgagtttcaaacaaataaaaggtttcttatggtataaacaa |
82 |
Q |
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| T |
3053030 |
tattataaagagagaggtatatgagtttcaaacaaataaaaggtttctgatggtataaacaa |
3053091 |
T |
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