View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_210 (Length: 210)
Name: NF6076_low_210
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_210 |
 | |
|
| [»] chr6 (29 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4592155 - 4592364
Alignment:
| Q |
1 |
tcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592155 |
tcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctcctt |
4592254 |
T |
|
| Q |
101 |
gatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592255 |
gatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcct |
4592354 |
T |
|
| Q |
201 |
ttctctccca |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
4592355 |
ttctctccca |
4592364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 4563640 - 4563842
Alignment:
| Q |
6 |
acttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa-ttacttaaatttgattttatttaagcaacacctccttgatc |
104 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
4563640 |
acttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaagttacttaaatt-gattttgtttaagcaaaacctccttgatc |
4563738 |
T |
|
| Q |
105 |
aatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttct |
204 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| ||||||| | |||||| | |||||||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
4563739 |
actttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatcttctttcctttct |
4563838 |
T |
|
| Q |
205 |
ctcc |
208 |
Q |
| |
|
|||| |
|
|
| T |
4563839 |
ctcc |
4563842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 4585608 - 4585769
Alignment:
| Q |
52 |
ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct |
148 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||| |||||||| |||| ||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
4585608 |
ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc |
4585707 |
T |
|
| Q |
149 |
ctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4585708 |
ctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctccca |
4585769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 4613859 - 4613717
Alignment:
| Q |
68 |
ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc |
167 |
Q |
| |
|
|||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
4613859 |
ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc |
4613760 |
T |
|
| Q |
168 |
aactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
4613759 |
aactcaattgccttttgcctcattttctttcctttctctccca |
4613717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 4579421 - 4579565
Alignment:
| Q |
66 |
acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct |
165 |
Q |
| |
|
|||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4579421 |
acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct |
4579520 |
T |
|
| Q |
166 |
tcaactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4579521 |
tcaactcaattgccttttgcctcatcttctttgctttctctccca |
4579565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 4570970 - 4571105
Alignment:
| Q |
75 |
tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcga |
174 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
4570970 |
tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctcca |
4571069 |
T |
|
| Q |
175 |
ttgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4571070 |
ttatatttttcctcatcttctttcctttatctccca |
4571105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 4560502 - 4560636
Alignment:
| Q |
73 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc |
172 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||| ||| |
|
|
| T |
4560502 |
tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctc |
4560601 |
T |
|
| Q |
173 |
gattgcctttttcctcatcttctttcctttctctc |
207 |
Q |
| |
|
|| ||||||| |||||||||||||||||| |||| |
|
|
| T |
4560602 |
catggccttttgcctcatcttctttcctttatctc |
4560636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 4480693 - 4480826
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| ||||||||||||| || |
|
|
| T |
4480693 |
attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg |
4480792 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |
|
|
| T |
4480793 |
gccttttgcttcatcttctttcctttctctccca |
4480826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 4504523 - 4504396
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| ||| |||||| ||||||||||||||||| || |||||| |
|
|
| T |
4504523 |
tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt |
4504424 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
4504423 |
tgcctcatcttctttcctttctctccca |
4504396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 4557121 - 4557253
Alignment:
| Q |
73 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc |
172 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| |||||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
4557121 |
tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctc |
4557220 |
T |
|
| Q |
173 |
gattgcctttttcctcatcttctttcctttctc |
205 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
|
|
| T |
4557221 |
aattatctttttccacatcttctttcctttctc |
4557253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 4574305 - 4574439
Alignment:
| Q |
74 |
ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcg |
173 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||| |||||||| | |||||||||||||||||||||||| | ||||| |||||||||||| ||| |
|
|
| T |
4574305 |
ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca |
4574404 |
T |
|
| Q |
174 |
attgcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
|| || |||| |||||||||||||||||| ||||| |
|
|
| T |
4574405 |
atggctttttgcctcatcttctttcctttatctcc |
4574439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 4516302 - 4516454
Alignment:
| Q |
58 |
aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc |
157 |
Q |
| |
|
||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| ||| |||||| || |
|
|
| T |
4516302 |
aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc |
4516401 |
T |
|
| Q |
158 |
cttcttcttcaactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
|||||||||||| || || ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4516402 |
cttcttcttcaattccatggccttttgcctcatcttctttcctttatctccca |
4516454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 4598162 - 4598303
Alignment:
| Q |
68 |
ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc |
167 |
Q |
| |
|
|||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
4598162 |
ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttc |
4598261 |
T |
|
| Q |
168 |
aactcgattgcctttttcctcatcttctttcctttctctccc |
209 |
Q |
| |
|
|| || |||| ||||| |||||| ||||||||||| |||||| |
|
|
| T |
4598262 |
aaatcaattgtcttttgcctcattttctttcctttatctccc |
4598303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 3171747 - 3171874
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||| ||| || |||||| ||||||||||||||||| || ||| || |
|
|
| T |
3171747 |
tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctt |
3171846 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
3171847 |
tgcctcatcttctttcctttctctccca |
3171874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4617022 - 4617153
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||||||||| || |
|
|
| T |
4617022 |
attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg |
4617121 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||| |
|
|
| T |
4617122 |
gccttttgcttcattttctttcctttatctcc |
4617153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 4515253 - 4515120
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||| |||||| | || ||| |||| ||| ||| || |||||||| |||||||| || |
|
|
| T |
4515253 |
attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata |
4515154 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |
|
|
| T |
4515153 |
acctttttcctcattttatttcctttctctccca |
4515120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 4490481 - 4490354
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||| ||||||| ||| || |||||||| |||| | ||||||||||||||||| | |||||| |
|
|
| T |
4490481 |
tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt |
4490382 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
4490381 |
tgcctcatcttctttcctttctctccca |
4490354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4492955 - 4493086
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| |||||| ||| |||||| |||||||| |||||||| | |
|
|
| T |
4492955 |
attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtg |
4493054 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
|| ||| |||||||||| |||||||||||||| |
|
|
| T |
4493055 |
gcttttctcctcatcttgtttcctttctctcc |
4493086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4505857 - 4505988
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| || | ||||||||||||||| |||||||||| |||||||| || ||||| ||| |||| |||||||| || |
|
|
| T |
4505857 |
attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg |
4505956 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
4505957 |
acctttttcctcatcttgtttcctttctctcc |
4505988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4601789 - 4601920
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| || |||| |||||||||| ||| ||||||||||||| || |
|
|
| T |
4601789 |
attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg |
4601888 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| |
|
|
| T |
4601889 |
gccttttgcctcatcttcttgcctttatctcc |
4601920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 4392152 - 4392048
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||| ||||| |||| ||||||| ||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
4392152 |
tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgccttt |
4392053 |
T |
|
| Q |
183 |
ttcct |
187 |
Q |
| |
|
||||| |
|
|
| T |
4392052 |
ttcct |
4392048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 4622148 - 4622274
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
|||||||| |||||||| || | |||||||||||| | ||||||||||| ||||| || || |||| || ||||||| ||||||||| || |||||| |
|
|
| T |
4622148 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
4622247 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccc |
209 |
Q |
| |
|
| ||||||||||||||||| |||||| |
|
|
| T |
4622248 |
tgtctcatcttctttcctttatctccc |
4622274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 4469809 - 4469934
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| || ||||| || | ||||||||||||| | |||||| |||||||||||| || ||||||| |||||||||| ||||| || |||| |
|
|
| T |
4469809 |
tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt |
4469908 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
| ||||||||||||||| |||||||| |
|
|
| T |
4469909 |
tccctcatcttctttccattctctcc |
4469934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 4625957 - 4626082
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| || || || |||| ||| |||| ||||| ||||||||||| || || || || ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
4625957 |
tttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttt |
4626056 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
| ||||||||||||||| || ||||| |
|
|
| T |
4626057 |
tgcctcatcttctttccgttatctcc |
4626082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 4267292 - 4267165
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || |||||| |||||||||| | | ||| |
|
|
| T |
4267292 |
tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagacattt |
4267193 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| | ||||| | |||||||||||||||| |
|
|
| T |
4267192 |
tgcttcatcatatttcctttctctccca |
4267165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4461123 - 4461254
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||||||| || ||||| || | ||||||||||||| | |||||| |||||||||||| || ||||||| |||||||||| || || || |
|
|
| T |
4461123 |
attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg |
4461222 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctcc |
208 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
4461223 |
accttttgcctcatcttctttccaatctctcc |
4461254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 4568072 - 4568189
Alignment:
| Q |
96 |
tccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc---cttcttcttcaactcgattgcctttttcctcatct |
192 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| || | |||||||| ||| || ||| || ||||||||||||||| | ||||||| |||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
193 |
tctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
4568172 |
tttttcctttctgtccca |
4568189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 4260256 - 4260162
Alignment:
| Q |
107 |
tttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctt |
201 |
Q |
| |
|
||||||||||||||| ||||| |||| || || ||| ||||||| |||||| |||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
4260256 |
tttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcctt |
4260162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
| Q |
73 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc |
143 |
Q |
| |
|
||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || |||||| |
|
|
| T |
4607027 |
tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc |
4606957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 20863986 - 20863842
Alignment:
| Q |
66 |
acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct |
165 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| ||| |||||| |||||||||| |
|
|
| T |
20863986 |
acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct |
20863887 |
T |
|
| Q |
166 |
tcaactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||| ||| ||||| ||||||| || ||||||||||||||| |
|
|
| T |
20863886 |
tcaactcatttgtcttttgcctcatcctccttcctttctctccca |
20863842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 1674226 - 1674359
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| |||||||||||||| || || |
|
|
| T |
1674226 |
attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg |
1674325 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
1674326 |
gccttttgcctcatcttttttccattctctccca |
1674359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 16686432 - 16686266
Alignment:
| Q |
46 |
actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc |
143 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
16686432 |
actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc |
16686333 |
T |
|
| Q |
144 |
gtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| | || ||| ||||| | | || || ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16686332 |
gggtcttcgtccaccttcatttgcagttcaattatctttttcctcatcttctttcctttctctccca |
16686266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 28000231 - 28000098
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||| ||||||||||| || |
|
|
| T |
28000231 |
attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg |
28000132 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
28000131 |
gccttttgcctcatcttttttccattctctccca |
28000098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 24103005 - 24103132
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| |||||| |||| |||| ||| ||| |||| || ||||||||||| ||||| | ||||| |
|
|
| T |
24103005 |
tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttt |
24103104 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| | ||||| ||||||| |||||||||| |
|
|
| T |
24103105 |
tgcttcatcgtctttccgttctctccca |
24103132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 3845 - 3718
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| |||||||| || | |||||||| |||||| ||||||| ||| || ||||| ||| ||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
3845 |
tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttt |
3746 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
3745 |
tgcctcatcttctttcctttctctccca |
3718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 4812 - 4686
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||| |||||||| || |||| || ||| ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
4812 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttt |
4713 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccc |
209 |
Q |
| |
|
| |||||||||| ||||||| |||||| |
|
|
| T |
4712 |
tgcctcatcttcattcctttatctccc |
4686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 1281114 - 1281238
Alignment:
| Q |
77 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
176 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| ||||||||||| ||||||||| || || |
|
|
| T |
1281114 |
attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg |
1281213 |
T |
|
| Q |
177 |
gcctttttcctcatcttctttcctt |
201 |
Q |
| |
|
||||||| ||||| |||||||||| |
|
|
| T |
1281214 |
gccttttctctcatattctttcctt |
1281238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 3086426 - 3086553
Alignment:
| Q |
83 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
182 |
Q |
| |
|
||||||||| |||||||| || | ||||||||||||||| ||||||||||| || || ||| |||| || || |||||||| ||||| | ||| |
|
|
| T |
3086426 |
tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattt |
3086525 |
T |
|
| Q |
183 |
ttcctcatcttctttcctttctctccca |
210 |
Q |
| |
|
| |||||||||||||||||| ||||||| |
|
|
| T |
3086526 |
tgcctcatcttctttcctttatctccca |
3086553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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