View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_213 (Length: 205)

Name: NF6076_low_213
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_213
NF6076_low_213
[»] chr4 (6 HSPs)
chr4 (1-196)||(37241905-37242100)
chr4 (14-107)||(37232850-37232943)
chr4 (14-107)||(37253099-37253192)
chr4 (14-107)||(37245017-37245110)
chr4 (142-178)||(37241890-37241926)
chr4 (122-178)||(37245129-37245185)
[»] scaffold0902 (2 HSPs)
scaffold0902 (32-178)||(3298-3441)
scaffold0902 (119-176)||(3483-3540)
[»] scaffold1652 (2 HSPs)
scaffold1652 (14-178)||(413-571)
scaffold1652 (119-177)||(335-393)
[»] scaffold1801 (1 HSPs)
scaffold1801 (58-178)||(122-239)
[»] chr6 (4 HSPs)
chr6 (58-178)||(14248242-14248359)
chr6 (31-178)||(14254049-14254190)
chr6 (28-178)||(14316777-14316924)
chr6 (13-93)||(14351555-14351635)
[»] scaffold1176 (3 HSPs)
scaffold1176 (58-178)||(238-352)
scaffold1176 (58-174)||(1355-1468)
scaffold1176 (117-179)||(114-176)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 37242100 - 37241905
Alignment:
Q  1 ctccctccaccagcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcc 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||    
T  37242100 ctccctccaccagcgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcc 37242001  T
Q  101 tcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctgctcctcc 196  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37242000 tcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctactcctcc 37241905  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 37232943 - 37232850
Alignment:
Q  14 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 107  Q
    |||| |||||||||| |||||| |||||| |||| | | || |  ||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  37232943 cgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctcct 37232850  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 37253192 - 37253099
Alignment:
Q  14 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 107  Q
    |||| |||||||||| |||||| ||||| ||||| | | ||  | ||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  37253192 cgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 37253099  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 37245110 - 37245017
Alignment:
Q  14 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 107  Q
    |||||||||| |||| |||||| ||||||| |||   | |||   ||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  37245110 cgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctcctcct 37245017  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 37241926 - 37241890
Alignment:
Q  142 catcgtcaatctctactcctccaactaaagcaccatc 178  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37241926 catcgtcgatctctactcctccaactaaagcaccatc 37241890  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 37245185 - 37245129
Alignment:
Q  122 tgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 178  Q
    ||||||||||||| | ||| ||||||| ||||||||||||||| || ||||||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

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Target: scaffold0902 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 3441 - 3298
Alignment:
Q  32 atcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcct 131  Q
    |||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||   |||||||||| || ||||| || |||||||||    
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat---ctcctcctcatgcttccccagcagccgctcct 3345  T
Q  132 gctattactacatcgtcaatctctactcctccaactaaagcaccatc 178  Q
    || |||||| ||||| | |||||||| |||||| |||||||||||||    
T  3344 gccattactccatcggcgatctctacccctccatctaaagcaccatc 3298  T

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Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 3540 - 3483
Alignment:
Q  119 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcacca 176  Q
    ||||||| |||||||| | ||| ||||||| ||||||||||||||| || ||||||||    
T  3540 tgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca 3483  T

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Target: scaffold1652 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 413 - 571
Alignment:
Q  14 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcc 113  Q
    |||||||||| |||  |||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| ||     
T  413 cgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagct 506  T
Q  114 tcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 178  Q
    ||||| || ||| |||||||||||||| ||||| | |||||||| || ||| |||||||||||||    
T  507 tcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatc 571  T

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Target: scaffold1652; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 335 - 393
Alignment:
Q  119 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccat 177  Q
    |||||||||||||||| | ||| ||||||| || |||||||||||| || |||||||||    
T  335 tgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccat 393  T

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Target: scaffold1801 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 122 - 239
Alignment:
Q  58 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 157  Q
    ||||||||||||||||||| |||||||||||||||| ||   |||||||||| || || || || || |||||||| |||||| ||||||| ||||||||    
T  122 gtccttctccttcaccgtctgccatcaactctccacaat---ctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctac 218  T
Q  158 tcctccaactaaagcaccatc 178  Q
     |||||| |||||||| ||||    
T  219 ccctccatctaaagcatcatc 239  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 14248359 - 14248242
Alignment:
Q  58 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 157  Q
    ||||||||||||||||||| ||||||||||||||| |||   |||||||||| || | ||| || ||| ||||||| |||||| ||||| | ||||||||    
T  14248359 gtccttctccttcaccgtctgccatcaactctccatcat---ctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctac 14248263  T
Q  158 tcctccaactaaagcaccatc 178  Q
     |||||| |||||||||||||    
T  14248262 ccctccatctaaagcaccatc 14248242  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 14254190 - 14254049
Alignment:
Q  31 catcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcc 130  Q
    ||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || || ||||| ||  ||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcacctgcagctactcc 14254097  T
Q  131 tgctattactacatcgtcaatctctactcctccaactaaagcaccatc 178  Q
    |||||||||| ||||||| |||||||  |||||| |||||| ||||||    
T  14254096 tgctattactccatcgtcgatctctatccctccatctaaagtaccatc 14254049  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 14316924 - 14316777
Alignment:
Q  28 cagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgc 127  Q
    |||||||| ||||||||||| | | |||  ||||||||  ||||||||| ||||||||||||||| |||   |||||||||| || ||||| || ||| |    
T  14316924 cagcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcat---ctcctcctcaagcttcccccgcagccac 14316828  T
Q  128 tcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 178  Q
    ||| || || ||| |||| || |||||||| |||||  |||||||||||||    
T  14316827 tccggccatcactccatcatcgatctctacccctccttctaaagcaccatc 14316777  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 14351635 - 14351555
Alignment:
Q  13 gcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccac 93  Q
    |||||||||||||||    |||||||||| ||||| ||| |||| |||||||||||||| | ||| |||||||||||||||    
T  14351635 gcgctaactcaccggtgatatcttctcccatacctgtaaagagtagtccttctccttcatcatccaccatcaactctccac 14351555  T

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Target: scaffold1176 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 238 - 352
Alignment:
Q  58 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 157  Q
    |||||||||||||||| || ||||||||||||  ||||||      |||||| || ||||| || ||| | |||||||||||| ||||||| ||||||||    
T  238 gtccttctccttcaccatctgccatcaactctagaccatc------tcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctac 331  T
Q  158 tcctccaactaaagcaccatc 178  Q
     |||||| |||||||||||||    
T  332 ccctccatctaaagcaccatc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 1355 - 1468
Alignment:
Q  58 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctcta- 156  Q
    ||||||||||||||||||  |||||||||| ||||||||   |||||||||| || ||||| ||  | ||||| |||| |||| |||||||||||||||     
T  1355 gtccttctccttcaccgtgtgccatcaactgtccaccat---ctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctac 1450  T
Q  157 ctcctccaactaaagcac 174  Q
    | |||||| |||||||||    
T  1451 cccctccatctaaagcac 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 114 - 176
Alignment:
Q  117 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcg 179  Q
    |||||||| ||||||||| | ||| |||| || ||||||||||||||| || |||||||||||    
T  114 cctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcg 176  T

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