View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_23 (Length: 492)
Name: NF6076_low_23
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 41702798 - 41702334
Alignment:
| Q |
8 |
caccacagacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaac |
107 |
Q |
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| T |
41702798 |
caccaaagacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaac |
41702699 |
T |
|
| Q |
108 |
aacagcttcggctgcaaagcagcgcccaaacctccctgcactgtcaacaaccagcagcagctgccactatgacagcaacacagcaaaccaagcacacggc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
41702698 |
aacagcttcggctgcaaagcagcgcccaaacctccctgcgctgtcaagaaccagcagcagctgccactatgacagcaacacagcagaccaagcacgcggc |
41702599 |
T |
|
| Q |
208 |
aacacaactgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctccgagcctcaccgctgcacagccagcaaggcca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41702598 |
aacacaactgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctccgagcctcaccgctgtacagccagcaaggcca |
41702499 |
T |
|
| Q |
308 |
acaaaagctggaaccgataactgacagctattatctcaataaacagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702498 |
acaaaagctggaaccgataactgacagctattatctcaataaacagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatca |
41702399 |
T |
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| Q |
408 |
tgtatatttaaacatattttggatggttataattaatggatatccggtatatttcaatatctgaaaatct |
477 |
Q |
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| T |
41702398 |
tgtatatttaaacatattttggatggtta----taatggatat-cggtatatttcaatatctgaaaatct |
41702334 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 6316512 - 6316552
Alignment:
| Q |
348 |
aaacagtcccggggactccattcccattcataaaacaaaca |
388 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| |
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| T |
6316512 |
aaacagtcccgggggttccactcccattcataaaacaaaca |
6316552 |
T |
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