View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_25 (Length: 487)
Name: NF6076_low_25
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 2131571 - 2131296
Alignment:
| Q |
18 |
tatataaatgaacggataaaatgattgtagttggaaatttatgttactttactaattgtatgactattttagttacttgaggacaagcgatactttaagt |
117 |
Q |
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| T |
2131571 |
tatataaatgaacggataaaatgattgtagttggaaatttatgttactttactaattgtatggctattt-agttacttgaggacaagcgatactttaagt |
2131473 |
T |
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| Q |
118 |
ttagggttgtcgtgactctttatcatatatcatgtattttagtgttttaaagag-nnnnnnnnngtcattttagcttacgatgtttagaggaatctagtg |
216 |
Q |
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| T |
2131472 |
atggggttgtggtgactctttatcatatatcatgtattttagtgttttaaagagttttttttttgtcattttagcttaggatgtttagaggaatctagtg |
2131373 |
T |
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| Q |
217 |
aattaatgatagtttagaaaaagagtctataatattttgaattgagtcatgtatttccataaccagacaactctata |
293 |
Q |
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| T |
2131372 |
aattactaatagtctagaaaaagagtctataatattttgaattgagtcatgtatttccataaccagacaactctata |
2131296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 314 - 471
Target Start/End: Complemental strand, 34963971 - 34963814
Alignment:
| Q |
314 |
aatttcatatatactatagaagtctaatctaacatatgcataatgaaattcaattatagaattctaagagaattttgatgcaactgagtgtaaaaaaggt |
413 |
Q |
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| T |
34963971 |
aatttcatatatactatagaagtctaatctaacatatgcataatgaaattcaattatagaattctaagagaattttgatgcaactgattgtaaaaaaggt |
34963872 |
T |
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| Q |
414 |
tactatcttgcgattgatcatcataaacaatcatttgaatgacttctaagttagatat |
471 |
Q |
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| T |
34963871 |
tactatcttgcgattgatcatcataaacaatcatttgaatgatttctaagttagatat |
34963814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 24750959 - 24750922
Alignment:
| Q |
90 |
ttacttgaggacaagcgatactttaagtttagggttgt |
127 |
Q |
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|||||||||||||||| ||| ||||||||||||||||| |
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| T |
24750959 |
ttacttgaggacaagcaatagtttaagtttagggttgt |
24750922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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