View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_26 (Length: 485)

Name: NF6076_low_26
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_26
NF6076_low_26
[»] chr4 (18 HSPs)
chr4 (197-388)||(51811570-51811761)
chr4 (15-201)||(51811862-51812048)
chr4 (14-140)||(12473713-12473839)
chr4 (14-140)||(12528122-12528248)
chr4 (15-140)||(21260803-21260928)
chr4 (14-143)||(33249410-33249539)
chr4 (14-152)||(22343334-22343472)
chr4 (14-143)||(35869607-35869736)
chr4 (55-143)||(52910126-52910214)
chr4 (72-155)||(55590476-55590559)
chr4 (53-143)||(52012784-52012874)
chr4 (418-478)||(51811481-51811541)
chr4 (63-142)||(34829168-34829247)
chr4 (53-140)||(9799438-9799525)
chr4 (53-143)||(49999663-49999753)
chr4 (56-126)||(46719953-46720023)
chr4 (90-143)||(49998488-49998541)
chr4 (59-118)||(1796163-1796222)
[»] chr2 (9 HSPs)
chr2 (53-154)||(7381687-7381788)
chr2 (15-155)||(34392118-34392258)
chr2 (53-154)||(21603954-21604055)
chr2 (15-135)||(23863840-23863958)
chr2 (54-155)||(37357997-37358098)
chr2 (55-112)||(41095863-41095920)
chr2 (67-142)||(4775641-4775716)
chr2 (53-143)||(14565928-14566018)
chr2 (15-126)||(4779608-4779719)
[»] chr1 (10 HSPs)
chr1 (53-154)||(32676131-32676232)
chr1 (15-143)||(29119361-29119489)
chr1 (16-143)||(2569043-2569169)
chr1 (53-143)||(8809715-8809805)
chr1 (56-154)||(25161304-25161402)
chr1 (57-120)||(3688917-3688980)
chr1 (53-136)||(8462141-8462224)
chr1 (68-143)||(7214501-7214576)
chr1 (96-143)||(46435571-46435618)
chr1 (53-140)||(35998261-35998348)
[»] chr5 (15 HSPs)
chr5 (53-152)||(19357336-19357435)
chr5 (15-143)||(33858575-33858703)
chr5 (53-143)||(38010689-38010779)
chr5 (53-154)||(9827783-9827884)
chr5 (53-155)||(11607609-11607711)
chr5 (53-154)||(39570118-39570219)
chr5 (53-143)||(13015387-13015477)
chr5 (53-143)||(1826265-1826355)
chr5 (53-143)||(29989968-29990058)
chr5 (54-143)||(13086759-13086848)
chr5 (53-133)||(33271630-33271710)
chr5 (53-143)||(13478120-13478210)
chr5 (53-143)||(13421085-13421175)
chr5 (53-101)||(37881189-37881237)
chr5 (53-93)||(42148202-42148242)
[»] scaffold0032 (1 HSPs)
scaffold0032 (53-155)||(34188-34290)
[»] chr3 (16 HSPs)
chr3 (53-143)||(50934506-50934596)
chr3 (15-143)||(47426356-47426484)
chr3 (53-143)||(47186181-47186271)
chr3 (16-143)||(33509686-33509813)
chr3 (15-154)||(44380249-44380388)
chr3 (53-142)||(31187145-31187234)
chr3 (53-136)||(37742738-37742821)
chr3 (83-157)||(10179868-10179942)
chr3 (81-143)||(32319468-32319530)
chr3 (53-143)||(42664679-42664769)
chr3 (53-140)||(34029366-34029453)
chr3 (53-126)||(17466296-17466369)
chr3 (15-141)||(35094554-35094682)
chr3 (83-157)||(10018671-10018745)
chr3 (53-143)||(39498744-39498834)
chr3 (83-157)||(10123211-10123285)
[»] chr8 (8 HSPs)
chr8 (53-142)||(18168392-18168481)
chr8 (53-142)||(18631949-18632038)
chr8 (15-154)||(41179600-41179739)
chr8 (15-143)||(24337867-24337995)
chr8 (53-143)||(1514809-1514899)
chr8 (16-141)||(4708345-4708470)
chr8 (53-153)||(11254103-11254202)
chr8 (53-143)||(32825910-32826000)
[»] chr7 (6 HSPs)
chr7 (54-143)||(48250160-48250249)
chr7 (15-154)||(35341531-35341670)
chr7 (56-143)||(31306951-31307039)
chr7 (53-125)||(32694645-32694717)
chr7 (15-153)||(48072385-48072521)
chr7 (53-125)||(40893116-40893189)
[»] chr6 (6 HSPs)
chr6 (17-143)||(1211883-1212009)
chr6 (15-143)||(5403913-5404041)
chr6 (53-143)||(34245573-34245663)
chr6 (84-143)||(11753173-11753232)
chr6 (56-143)||(11113562-11113649)
chr6 (53-143)||(32644912-32645001)
[»] scaffold0229 (1 HSPs)
scaffold0229 (53-143)||(13081-13171)
[»] scaffold0519 (1 HSPs)
scaffold0519 (53-153)||(11191-11290)
[»] scaffold0263 (2 HSPs)
scaffold0263 (53-119)||(23174-23240)
scaffold0263 (100-143)||(23099-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (53-125)||(73095-73168)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 197 - 388
Target Start/End: Complemental strand, 51811761 - 51811570
Alignment:
Q  197 ccatcattggggatgctcataattgatgacaagaacgcagattgacccaatacataccaaaagtcttcgtggcgatcatttttaaagtaaccatataact 296  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51811761 ccatcattggggatgctcataattgatgacaagaacgcaggttgacccaatacataccaaaagtctttgtggcgatcatttttaaagtaaccatataact 51811662  T
Q  297 ttgtcaatcttcaagtacatttaacatcgttcaccaaaatattgatgaagttaggtgagtaattttgaatcttacattgaagagaattattc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51811661 ttgtcaatcttcaagtacatttaacatcgttcaccaaaatattgatgaagttaggtgagtaattttgaatcttacattgaagagaattattc 51811570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 51812048 - 51811862
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| || ||| ||||||||||       ||||||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||| |    
T  51812048 caattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataa 51811949  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatccgcactcatacacatccaacattgtatgttgaaagcatgagatccatc 201  Q
    |||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51811948 tatatatctttgataccttaatggtacacgagtggaatccgcactcatacacatccaacattgtatgttgaaagcatgagatccatc 51811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 12473839 - 12473713
Alignment:
Q  14 tcaattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatg 113  Q
    |||||||||||||| ||| || ||||||||||       |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  12473839 tcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatg 12473740  T
Q  114 atatataccattggtaccttaatggta 140  Q
     ||||||||||||||||||||||||||    
T  12473739 gtatataccattggtaccttaatggta 12473713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 12528248 - 12528122
Alignment:
Q  14 tcaattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatg 113  Q
    |||||||||||||| ||| || ||||||||||       |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  12528248 tcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatg 12528149  T
Q  114 atatataccattggtaccttaatggta 140  Q
     ||||||||||||||||||||||||||    
T  12528148 gtatataccattggtaccttaatggta 12528122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 21260928 - 21260803
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||||||| || ||||||||||       |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  21260928 caattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatga 21260829  T
Q  115 tatataccattggtaccttaatggta 140  Q
    |||||| |||||||||||||||||||    
T  21260828 tatatatcattggtaccttaatggta 21260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 33249410 - 33249539
Alignment:
Q  14 tcaattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatg 113  Q
    ||||||||| |||||||| || ||||||||||       |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||     
T  33249410 tcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaatt 33249509  T
Q  114 atatataccattggtaccttaatggtacac 143  Q
     ||||||||||| |||||||||||||||||    
T  33249510 gtatataccatttgtaccttaatggtacac 33249539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 22343472 - 22343334
Alignment:
Q  14 tcaattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatg 113  Q
    |||||||||||||| ||| || |||| |||||       |||||||||||||| |||||||||||||||||| ||| ||  ||||||||||||| |||||    
T  22343472 tcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatg 22343373  T
Q  114 atatataccattggtaccttaatggtacacgagcggaat 152  Q
    ||||||||||||| |||||||||||||||| || |||||    
T  22343372 atatataccattgataccttaatggtacacaagtggaat 22343334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 35869607 - 35869736
Alignment:
Q  14 tcaattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatg 113  Q
    |||||||||||||| ||  || ||||||||||       |||||||||||||  ||||||| |||||||||||||||||| ||| | ||||||| |||||    
T  35869607 tcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatg 35869706  T
Q  114 atatataccattggtaccttaatggtacac 143  Q
     |||||||||||||||||||||||||||||    
T  35869707 gtatataccattggtaccttaatggtacac 35869736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 52910126 - 52910214
Alignment:
Q  55 tatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |||||| |||||||||| | |||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacac 52910214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 55590559 - 55590476
Alignment:
Q  72 ataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatccg 155  Q
    |||||||||||||||||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||| || ||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaatccg 55590476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 52012874 - 52012784
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||| | ||||| ||||| |||||| ||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacac 52012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 51811541 - 51811481
Alignment:
Q  418 caatctcactgatatgaccaatgcaatccaccacaaaaccattctcaaaactactcctttg 478  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51811541 caatcccactgatatgatcaatgcaatccaccacaaaaccattctcaaaactactcctttg 51811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 34829168 - 34829247
Alignment:
Q  63 aaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtaca 142  Q
    |||| |||||||||||||||||||||||||  ||||| |||||||||| ||||||||| ||||||||||||||| |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtaca 34829247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 9799438 - 9799525
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggta 140  Q
    ||||| |||||||  ||||||||||||||||||||| |||| ||| |||  |||| ||||| |||||| |||||||||||||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggta 9799525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 49999663 - 49999753
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| ||||||||| ||||||||||| |||  |||||||||||| ||||||| | ||| |||| ||| ||| |||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacac 49999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  56 atcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattg 126  Q
    ||||||||||| ||||||||||||||||| ||| |||| ||||||| ||||| ||||| |||||| |||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 49998541 - 49998488
Alignment:
Q  90 gtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||| |||| |||||||||||||||||||||  |||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacac 49998488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 1796222 - 1796163
Alignment:
Q  59 aaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatata 118  Q
    |||||||  |||||||||||||||||| ||||||| ||| | ||||||||||||| ||||    
T  1796222 aaataaaacatttataaagtaacattgataggtggcacaatataattggccaatggtata 1796163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 7381788 - 7381687
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  7381788 tatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaat 7381689  T
Q  153 cc 154  Q
    ||    
T  7381688 cc 7381687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 34392118 - 34392258
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    |||||||| |||||||| || ||||||||||       |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||     
T  34392118 caattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatgg 34392217  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatccg 155  Q
    |||||||||||||||||| |||||||||| || ||||||||    
T  34392218 tatataccattggtacctcaatggtacacaagtggaatccg 34392258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 21604055 - 21603954
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||| || |||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaat 21603956  T
Q  153 cc 154  Q
    ||    
T  21603955 cc 21603954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 23863840 - 23863958
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||||||| || ||||||||||       |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||      
T  23863840 caattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaat-- 23863937  T
Q  115 tatataccattggtaccttaa 135  Q
     ||||||||||||||||||||    
T  23863938 aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 37357997 - 37358098
Alignment:
Q  54 atatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatc 153  Q
    |||| |||||||| |||||||||||||||||| ||||||  ||||||||||| | ||||| |||||| |||||||||||||||| ||||| || ||||||    
T  37357997 atattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaatc 37358096  T
Q  154 cg 155  Q
    ||    
T  37358097 cg 37358098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 41095863 - 41095920
Alignment:
Q  55 tatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaat 112  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  41095863 tatcaaataaagcatttataaagtaacattggtaggtggtgcactctaattgaccaat 41095920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 4775716 - 4775641
Alignment:
Q  67 aatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtaca 142  Q
    |||| ||||||||| |||||||| ||  ||| |||||||||||||| ||||||| |||||||| ||||||||||||    
T  4775716 aattaataaagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtaca 4775641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 14565928 - 14566018
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||| ||| | ||||||| ||| ||||||| || | |||||||| |||  |||||||||||| ||||||||||||| ||||||||    
T  14565928 tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtaccttagtggtacac 14566018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 4779719 - 4779608
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| ||  ||||||| |||||       |||||||||||||| |||||||||||||||||| |||| || ||||| ||| ||  |||||     
T  4779719 caattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataaagtaacattgttaggcggcacactataagtgatcaatgg 4779620  T
Q  115 tatataccattg 126  Q
    ||||||| ||||    
T  4779619 tatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 32676232 - 32676131
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  32676232 tatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 32676133  T
Q  153 cc 154  Q
    ||    
T  32676132 cc 32676131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 29119361 - 29119489
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||||||| || ||||||||||       |||||||||||||| || |||||||||||| || ||||||| |||||||||||||||||||     
T  29119361 caattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatgg 29119460  T
Q  115 tatataccattggtaccttaatggtacac 143  Q
    |||||||||||||||||||||||||||||    
T  29119461 tatataccattggtaccttaatggtacac 29119489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 2569169 - 2569043
Alignment:
Q  16 aattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgat 115  Q
    ||||||||||||||| ||| ||||||||||       |||||||||||||| |||  ||| ||||||||||||||||| |||||||||||||| ||||||    
T  2569169 aattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgat 2569071  T
Q  116 atataccattggtaccttaatggtacac 143  Q
    ||||||||||||||||||||||||||||    
T  2569070 atataccattggtaccttaatggtacac 2569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 8809715 - 8809805
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||| ||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacac 8809805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 25161402 - 25161304
Alignment:
Q  56 atcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatcc 154  Q
    ||||||||||  |||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||  || |||||||||||| || |||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaatcc 25161304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 3688917 - 3688980
Alignment:
Q  57 tcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatata 120  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaatgatatata 3688980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 8462224 - 8462141
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaat 136  Q
    ||||| |||||||  ||||||||| |||||||||||||||| ||||| ||||||  |||||||||||||||||||||| |||||    
T  8462224 tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtactttaat 8462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 7214501 - 7214576
Alignment:
Q  68 atttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||||||||||| || | ||||||  |||||||||||| ||||| |||||||| ||| |||||||||||||||||    
T  7214501 atttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacac 7214576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 46435571 - 46435618
Alignment:
Q  96 cactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacac 46435618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 35998348 - 35998261
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggta 140  Q
    ||||| |||||||  | ||||||| |||||||| || |||| ||||||| |||   ||||| |||||| |||||||||||||||||||    
T  35998348 tatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgttatataacattggtaccttaatggta 35998261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 19357336 - 19357435
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  19357336 tatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaat 19357435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 33858575 - 33858703
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| ||  || ||||||||||       |||||||||||||  |||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  33858575 caattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatga 33858674  T
Q  115 tatataccattggtaccttaatggtacac 143  Q
    ||||||| |||||||||||||||||||||    
T  33858675 tatatactattggtaccttaatggtacac 33858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 38010689 - 38010779
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacac 38010779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 9827884 - 9827783
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||| || |||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaat 9827785  T
Q  153 cc 154  Q
    ||    
T  9827784 cc 9827783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 11607609 - 11607711
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  ||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||| || || |||||    
T  11607609 tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaat 11607708  T
Q  153 ccg 155  Q
    |||    
T  11607709 ccg 11607711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 39570118 - 39570219
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||| ||||| || |||||    
T  39570118 tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatactttaatgatacacaagtggaat 39570217  T
Q  153 cc 154  Q
    ||    
T  39570218 cc 39570219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 13015477 - 13015387
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||| ||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacac 13015387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 1826355 - 1826265
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| || || ||||||| |||||||||||  |||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  1826355 tatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacac 1826265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 29990058 - 29989968
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||| ||||| ||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacac 29989968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 13086848 - 13086759
Alignment:
Q  54 atatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||||||||||  ||||||||| ||||||||||| |||| ||||||| ||||| ||||| |||||| ||||||||||||||||||||||    
T  13086848 atatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacac 13086759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 33271710 - 33271630
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtacctt 133  Q
    |||||||||||||| |||||| ||||||||||| ||| ||  |||||||||||||||||||||||||| ||||||||||||    
T  33271710 tatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 13478120 - 13478210
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||| ||||| |||| ||||||| ||||| ||||| |||||| ||||||| ||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacac 13478210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 13421085 - 13421175
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||| |||||||| |||||||||||||||||| ||  || |||||||| ||||  ||||| |||||| ||||| ||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacac 13421175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 37881237 - 37881189
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactct 101  Q
    |||||||||||||  ||||||||||||||||||||| |||| |||||||    
T  37881237 tatatcaaataaaatatttataaagtaacattggtatgtggcacactct 37881189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 42148242 - 42148202
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtgg 93  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  42148242 tatatcaaataaaacatttataaagtaacattggtaggtgg 42148202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 34290 - 34188
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  ||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  34290 tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaat 34191  T
Q  153 ccg 155  Q
    |||    
T  34190 ccg 34188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 50934596 - 50934506
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacac 50934506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 47426484 - 47426356
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    |||||||||||| |||| || ||||||||||       |||||||||||||| || ||||||||||||||| ||||||  |||||||||||||||||||     
T  47426484 caattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatgg 47426385  T
Q  115 tatataccattggtaccttaatggtacac 143  Q
    ||||||| |||||||||||||||||||||    
T  47426384 tatatactattggtaccttaatggtacac 47426356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 47186271 - 47186181
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacac 47186181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 33509813 - 33509686
Alignment:
Q  16 aattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgat 115  Q
    |||||||||||||||| || |||| |||||       || ||||||||||| || |||||||||| |||||||||||| ||||||||||||| |||||||    
T  33509813 aattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgat 33509714  T
Q  116 atataccattggtaccttaatggtacac 143  Q
    |||||| ||| |||||||||||||||||    
T  33509713 atatactattagtaccttaatggtacac 33509686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 44380388 - 44380249
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| ||  || ||||||||||       |||||||||||||| ||||||||||||| |||| ||||||  ||||| ||||||| ||||      
T  44380388 caattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatag 44380289  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatcc 154  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  44380288 tatataccattggtaccttaatggtacacaagtggaatcc 44380249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 31187145 - 31187234
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtaca 142  Q
    |||||||||||||  ||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||| |||||||||||||||||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtaca 31187234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 37742821 - 37742738
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaat 136  Q
    |||||||||||||| |||  ||| ||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  37742821 tatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10179868 - 10179942
Alignment:
Q  83 ttggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatccgca 157  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||| || ||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaatccgca 10179942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 32319468 - 32319530
Alignment:
Q  81 cattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacac 32319530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 42664769 - 42664679
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||| ||||||||||| |||| ||||||| ||||| ||||| |||||| | ||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacac 42664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 34029366 - 34029453
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggta 140  Q
    |||||||||||||  ||||||||||||||||| ||| |||| ||||||| ||||  ||||| |||||| |||||||||||||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggta 34029453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 17466369 - 17466296
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattg 126  Q
    |||||||| ||||  |||||||||||||||||| ||||||  |||||||||||| |||||||||||||||||||    
T  17466369 tatatcaactaaatcatttataaagtaacattgataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 35094682 - 35094554
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtgg--tacactctaattggccaat 112  Q
    ||||||||||||| ||  ||||||| |||||       |||||||||||||  ||||||||||||||||||||||||||  ||| || ||||| | ||||    
T  35094682 caattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaat 35094583  T
Q  113 gatatataccattggtaccttaatggtac 141  Q
    | ||||||||| |||||| ||||||||||    
T  35094582 ggtatataccactggtactttaatggtac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10018671 - 10018745
Alignment:
Q  83 ttggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatccgca 157  Q
    ||||||||||| ||||| | |||| |||||| |||||| ||||||||| |||||||||||| || ||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaatccgca 10018745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 39498744 - 39498834
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||| |||||||  ||||||||| |||||| | ||||||  ||||| |||||| ||||| ||||||| ||||||||| ||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacac 39498834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10123211 - 10123285
Alignment:
Q  83 ttggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaatccgca 157  Q
    ||||||||||| ||||| | |||| ||| ||||||||| ||||| ||| |||||||||||| || ||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaatccgca 10123285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 18168481 - 18168392
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtaca 142  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18168481 tatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 18632038 - 18631949
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtaca 142  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18632038 tatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 41179600 - 41179739
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||||||| || |||| || ||       ||||| |||||||  |||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  41179600 caattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatga 41179699  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatcc 154  Q
    |||||| |||||||||||||||||||||| || |||||||    
T  41179700 tatatatcattggtaccttaatggtacacaagtggaatcc 41179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 24337867 - 24337995
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    |||||||||||||| || || ||||||||||       |||||||||||||| || ||||||||||||||||||| ||| |||||||||||| || |||     
T  24337867 caattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatgg 24337966  T
Q  115 tatataccattggtaccttaatggtacac 143  Q
    |||||||||||| ||||||||| ||||||    
T  24337967 tatataccattgctaccttaatagtacac 24337995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 1514899 - 1514809
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacac 1514809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 4708345 - 4708470
Alignment:
Q  16 aattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgat 115  Q
    |||||||||||||||  || ||||||||||       |||||||||||||  |||||||||||||||||||||||||  ||||| ||||||||  |||||    
T  4708345 aattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgat 4708444  T
Q  116 atataccattggtaccttaatggtac 141  Q
    |||| |||||||||||||| ||||||    
T  4708445 atatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 11254103 - 11254202
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||||  |||||||||||| || |||||    
T  11254103 tatatcaaataaaacatttataaagtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaat 11254201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 32825910 - 32826000
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  |  |||||| |||||||| || |||  | ||||||||||||||||| |||| | ||||| ||| ||||||||||||    
T  32825910 tatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtatacaacattgatactttaatggtacac 32826000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 48250249 - 48250160
Alignment:
Q  54 atatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  48250249 atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacac 48250160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 35341670 - 35341531
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| ||  || ||||||||||       |||||||||||||  |||||||||||||||||||||||||| ||||| ||||||| |||||     
T  35341670 caattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgg 35341571  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatcc 154  Q
    |||||| |||||||||||||||||||||| || |||||||    
T  35341570 tatatatcattggtaccttaatggtacacaagtggaatcc 35341531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 31306951 - 31307039
Alignment:
Q  56 atcaaataaagaatttataaagtaacattggtaggtggtacactct-aattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||||||||| |||||||||||||||||||||||| | ||||| | |||||| |||||||||||| ||||| ||| ||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacac 31307039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 32694645 - 32694717
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccatt 125  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||  |||||| |||||| ||||    
T  32694645 tatatcaaataaagaatttataaagtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 48072521 - 48072385
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||||||  || ||||||||||       || ||||||||||  ||||||||| ||||||||  | |||| ||||||||||||  |||||     
T  48072521 caattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatg- 48072423  T
Q  115 tatataccattggtaccttaatggtacacgagcggaatc 153  Q
      ||||| |||||||||||||| |||||| || ||||||    
T  48072422 -gtatactattggtaccttaatagtacacaagtggaatc 48072385  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 40893116 - 40893189
Alignment:
Q  53 tatatcaaataaa-gaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccatt 125  Q
    ||||||||||||| | |||||||||||||||||| ||| ||  ||| |||||||| |||||| |||||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccatt 40893189  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 1211883 - 1212009
Alignment:
Q  17 attagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgata 116  Q
    ||||||||||||||  || ||||||||||       |||||||||||||| ||  ||||||||||||||  |||||| |||| |||||| ||||||| ||    
T  1211883 attagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggta 1211982  T
Q  117 tataccattggtaccttaatggtacac 143  Q
    |||||||||||||||||||||||||||    
T  1211983 tataccattggtaccttaatggtacac 1212009  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 5403913 - 5404041
Alignment:
Q  15 caattagaatgtgccatatgacacaccctttnnnnnnntatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatga 114  Q
    ||||||||||||| ||| ||| || ||||||       |||||||||||||  || ||||||||||||||||||||||| | ||||||| || ||||| |    
T  5403913 caattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataa 5404012  T
Q  115 tatataccattggtaccttaatggtacac 143  Q
    ||||||||||| |||||||||||||||||    
T  5404013 tatataccattagtaccttaatggtacac 5404041  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 34245663 - 34245573
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||| ||||| |||||| ||||  ||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacac 34245573  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 11753232 - 11753173
Alignment:
Q  84 tggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacac 11753173  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 11113649 - 11113562
Alignment:
Q  56 atcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    ||||||||||| | ||| ||||||||||| ||| |||  ||||||| ||| | ||||| |||||| ||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacac 11113562  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 32644912 - 32645001
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||| ||||||||| |||| |||||||||||| |||||||  ||||  ||||||||||||||||||||| || | || |||||||||||||    
T  32644912 tataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacac 32645001  T

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Target: scaffold0229 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 13081 - 13171
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||| ||  ||||||||||||||  |||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  13081 tatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacac 13171  T

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Target: scaffold0519 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 11290 - 11191
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccattggtaccttaatggtacacgagcggaat 152  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||||  |||||||||||| || |||||    
T  11290 tatatcaaataaaacatttataaagtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaat 11192  T

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Target: scaffold0263 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 23174 - 23240
Alignment:
Q  53 tatatcaaataaagaatttataaagtaacattggtaggtggtacactctaattggccaatgatatat 119  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatatat 23240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 23142 - 23099
Alignment:
Q  100 ctaattggccaatgatatataccattggtaccttaatggtacac 143  Q
    |||||||||||||  ||||||||||||||||||||||| |||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacac 23099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 73168 - 73095
Alignment:
Q  53 tatatcaaataaa-gaatttataaagtaacattggtaggtggtacactctaattggccaatgatatataccatt 125  Q
    ||||||||||||| | |||||||||||||||||| ||| ||  ||| |||||||| |||||| |||||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccatt 73095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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