View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_27 (Length: 479)
Name: NF6076_low_27
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_27 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 26743388 - 26743607
Alignment:
| Q |
28 |
acacgaatcttgttttttcgtgacatgtataaaacaggaagataaaagagttgatatgatacgtatattaattttatttgagattgagcttaaaacaggc |
127 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743388 |
acacgagtcttgtttcttcgtgacatgtataaaacaggaagataaaagaggtgatatgatacgtatattaattttatttgagattgagcttaaaacaggc |
26743487 |
T |
|
| Q |
128 |
atacacgcaacagaaatgtgaaaactatgatcacattctaaacacttagttatttaaatgtta-----aaaattgtgataacaacctccatgaatctaat |
222 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26743488 |
atacaagcaacataaatgtgaaaactatgatcacattctaaacacttagttatttaaatgttacctccaaaattgtgataacaacctccatgaatctaat |
26743587 |
T |
|
| Q |
223 |
tacatctagaaaataatgga |
242 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26743588 |
tacatctagaaaataatgga |
26743607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 26736624 - 26736796
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26736624 |
agcctctcaacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26736723 |
T |
|
| Q |
401 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||| |
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|
| T |
26736724 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctc |
26736796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 121 - 468
Target Start/End: Original strand, 26750383 - 26750727
Alignment:
| Q |
121 |
aacaggcatacacgcaacagaaatgtgaaaactatgatcacattctaaacacttagttatttaaatgtta-----aaaattgtgataacaacctccatga |
215 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| ||| |
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| T |
26750383 |
aacaggcatataagcaacagaaatgtgaaaactatgatcacattctaaacactaa-ttatttaaatgttacctccaaaattgtgataacatcctccttga |
26750481 |
T |
|
| Q |
216 |
atctaattacatctagaaaataatggaaacacaggaagtagagcaataaa-gtaatgaatagccttaattatggtcatcccttaatagcctctcgacaac |
314 |
Q |
| |
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||| |||||||| |||||||||||||||||| |||||| |||| || | || | |||| |||||||||||||||||||||||| ||||| |
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|
| T |
26750482 |
atcaaattacatgtagaaaataatggaaaca---gaagtat-----taaatgtgtacactatcaataatcatggtcatcccttaatagcctctcaacaac |
26750573 |
T |
|
| Q |
315 |
ttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcataatttgatcccaat |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
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|
| T |
26750574 |
ttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagcaacatttgccaatgtctccatcttctttacatcataatttgatcccaat |
26750673 |
T |
|
| Q |
415 |
gcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt |
468 |
Q |
| |
|
||||| ||||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
26750674 |
tttgggtctacaatttgtgccacccaacaaccaacttctactccttttcttctt |
26750727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 26713388 - 26713560
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
400 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26713388 |
agcctctcaacaacttgacttatggtgggtctaacatctttctcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26713487 |
T |
|
| Q |
401 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |
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|
| T |
26713488 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctagtactttttttcttttctc |
26713560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 267 - 473
Target Start/End: Original strand, 26743601 - 26743807
Alignment:
| Q |
267 |
taatgaatagccttaattatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgca |
366 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
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|
| T |
26743601 |
taatggatagccttaattatgctcatcccttaatagcctctcaacaacttgactcatggtgggtctaacatctttctcttcctttacacaatccaaagca |
26743700 |
T |
|
| Q |
367 |
acatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttc |
466 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26743701 |
acatctgccaaagtctccatcttctttacatcataatttgatcccaatttagggtcaacaatttgctcaacccaacaaccaacttctaatccttttcttc |
26743800 |
T |
|
| Q |
467 |
ttctctc |
473 |
Q |
| |
|
|| |||| |
|
|
| T |
26743801 |
ttttctc |
26743807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 301 - 468
Target Start/End: Original strand, 26733399 - 26733566
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26733399 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagccacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26733498 |
T |
|
| Q |
401 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt |
468 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
26733499 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaaatttagatccttttcttctt |
26733566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 301 - 448
Target Start/End: Original strand, 26698236 - 26698383
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26698236 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagacacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26698335 |
T |
|
| Q |
401 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaa |
448 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
26698336 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaa |
26698383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 26691986 - 26692090
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
400 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26691986 |
agcctctcaacaacttgactcatggtaggtctaacatctttttcttcagccacacaatccaaagcaacatttgtcaaagtttccattctctttgcatcat |
26692085 |
T |
|
| Q |
401 |
aattt |
405 |
Q |
| |
|
||||| |
|
|
| T |
26692086 |
aattt |
26692090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 301 - 474
Target Start/End: Original strand, 26675021 - 26675194
Alignment:
| Q |
301 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagt-ttccatt-ctctttgcatc |
398 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| || || |||||| || ||| ||| | || || |
|
|
| T |
26675021 |
agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaaggtcttcaattgaacaatg--tc |
26675118 |
T |
|
| Q |
399 |
ataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctct |
474 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||| |||||| || |||||| || |||| |||||| ||||| |
|
|
| T |
26675119 |
ataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctct |
26675194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 443
Target Start/End: Original strand, 18658185 - 18658297
Alignment:
| Q |
331 |
ctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaattt |
430 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||| ||||| || |||||| |||||| | ||| |||| |||| | |||| |||||| || | ||||| |
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|
| T |
18658185 |
ctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataattt |
18658284 |
T |
|
| Q |
431 |
cttcaacccaaca |
443 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18658285 |
cttcaacccaaca |
18658297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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