View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_28 (Length: 479)
Name: NF6076_low_28
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_28 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Original strand, 56278259 - 56278737
Alignment:
| Q |
17 |
atcctcttggcttcaaagatgggaaattgctgattaaggtttctgcagagttatacatctatgacatgaagaatcacaagattgctcatgcttgttcctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278259 |
atcctcttggcttcaaagatgggaaattgctgattaaggtttctgcagagttatacatctatgacatgaagaatcacaagattgctcatgcttgttcctt |
56278358 |
T |
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| Q |
117 |
tctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattccttgactttggtttccctaaaagatccttagtatagaactaactcctat |
216 |
Q |
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| T |
56278359 |
tctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattccttgactttggtttccctaaaagatccttagtatagaactaactcctat |
56278458 |
T |
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| Q |
217 |
atattagcttttattatcggattatcaccgaatgttttgggaccattttagtttatatatatgtagaaactaagttgcctggaagg----ttccttcctt |
312 |
Q |
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| T |
56278459 |
atattagcttttattatcggattatcaccgaatgttttggga-tattttagtttatatatatgtagaaactaagttgcctggaaggttccttccttcctt |
56278557 |
T |
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| Q |
313 |
ccattccatagctgtg-------------gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagt |
399 |
Q |
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| T |
56278558 |
ccattccatagctgtggaaattttgagctgaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagt |
56278657 |
T |
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| Q |
400 |
ttcaattaatatttctgccatgagttattaatagtatttcagtcaatgcataaccatttgatctttgcatacttgtgctt |
479 |
Q |
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| T |
56278658 |
ttcaattaatatttctgcaatgagttgttaatagtatttcagtcaatgcataaccatttgatctttgcatacttttgctt |
56278737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 329 - 479
Target Start/End: Original strand, 46571223 - 46571370
Alignment:
| Q |
329 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgcca-tgagttat |
427 |
Q |
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| T |
46571223 |
gaagttatatattcttactaaccattttagtat----gtggacaaatttcagttgatcaatggtttcaagtttcaaataatatttctggcaatgagttga |
46571318 |
T |
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| Q |
428 |
taatagtatttcagtcaatgcataaccatttgatctttgcatacttgtgctt |
479 |
Q |
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| T |
46571319 |
taatagtatttcagtcaatgcataaccatttcatctttgcatacttttgctt |
46571370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 416
Target Start/End: Complemental strand, 15979284 - 15979201
Alignment:
| Q |
329 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
416 |
Q |
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| T |
15979284 |
gaagttatatattcttactagccattttagtat----gtggagaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
15979201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 19125690 - 19125618
Alignment:
| Q |
340 |
ttcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
416 |
Q |
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| T |
19125690 |
ttcttactcgccattttagtat----gtggacaaatttgagttgatcaatgttttcaagtttcaatgaatatttctg |
19125618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 19146637 - 19146607
Alignment:
| Q |
329 |
gaagttatatattcttactagccattttagt |
359 |
Q |
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| T |
19146637 |
gaagttatatattcttactagccattttagt |
19146607 |
T |
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