View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_29 (Length: 475)

Name: NF6076_low_29
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_29
NF6076_low_29
[»] chr3 (1 HSPs)
chr3 (1-459)||(2113370-2113828)


Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 2113370 - 2113828
Alignment:
Q  1 aggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatgtttgttcatttttcttactccttgaattgcagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2113370 aggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatggttgttcatttttcttactccttgaattgcagcc 2113469  T
Q  101 tttgcgaatttcaaaccacctgttctcttagcaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgcta 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2113470 tttgcgaatttcaaaccacctgttctcttagaaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgcta 2113569  T
Q  201 gtccaaacctcataagaagcgcagccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaactcgatgttaggctcatacagtttgtccactt 300  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2113570 gtccaaacctcacaagaagcgcggccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaactcgatgttaggctcatacagtttgtccactt 2113669  T
Q  301 cttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagcaggagaaaaccaaccaccgacaagaagcatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2113670 cttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagcaggagaaaaccaaccaccgacaagaagcatt 2113769  T
Q  401 cttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaag 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2113770 cttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaag 2113828  T

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