View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_32 (Length: 463)
Name: NF6076_low_32
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 41656743 - 41656309
Alignment:
| Q |
17 |
attcaaaacaaagtagatcctaaaccttactattactaccaattctcttcatccctaaggaaggaaaacataaaactaaaagttcttttcatgtggaaat |
116 |
Q |
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| T |
41656743 |
attcaaaacaaagtagatcctaaatcttactattactaccaattctcttcatccctaaggaaggaaaacataaaactaaaagttcttttcatgtggaaat |
41656644 |
T |
|
| Q |
117 |
atactgtaaggttgtcgttcctggaggcttcttcacttagttcacagcaacctcagctgaaaggaaatttgaatgaagtacatcctgaccagaaacttta |
216 |
Q |
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| T |
41656643 |
atactgtaaggttgtcgttcctggaggcttcttcacttagttcacagcaacctcagctgaaaggaaatttgaatgaagtacatcctgaccagaaacttta |
41656544 |
T |
|
| Q |
217 |
gctttagagttcttcagcacttggaaagcttcttccaccttggcagaaagagactctggtgattcaatgagaaccagcaattcagcattgtccatctcca |
316 |
Q |
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| T |
41656543 |
gctttagagttcttcagcacttggaaagcttcttccaccttggcagaaagagactctggtgattcaatgagaaccagcaattcagcattgtccatctcca |
41656444 |
T |
|
| Q |
317 |
aaagcatcccagtaatctttgctgctaggttaggctgctcaagatagcataataaatatactttttaagaattcaaaagcccaatcttatatacccnnnn |
416 |
Q |
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| T |
41656443 |
aaagcatcccagtaatctttgctgctaggttaggctgctcaacatagcataataaatatactttttaagaattcaaaagcccaatcttatataccc--aa |
41656346 |
T |
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| Q |
417 |
nnnnngagaatagtgcaaagttataccttgatattct |
453 |
Q |
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| T |
41656345 |
aaaaagagaatagtgcaaagttataccttgattttct |
41656309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 41659726 - 41659656
Alignment:
| Q |
54 |
accaattctcttcatccctaaggaaggaaaacataaaactaaaagttcttttcatgtggaaatatactgta |
124 |
Q |
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| T |
41659726 |
accaattcttgtcatccctaaggaaggaaaacataaaactgaaagttcttttcacttggaaatatgctgta |
41659656 |
T |
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