View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_37 (Length: 432)
Name: NF6076_low_37
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 7036813 - 7037221
Alignment:
| Q |
19 |
ccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcctgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctc |
118 |
Q |
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| T |
7036813 |
ccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcttgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctc |
7036912 |
T |
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| Q |
119 |
tccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcat |
218 |
Q |
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| T |
7036913 |
tccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcat |
7037012 |
T |
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| Q |
219 |
tttcctagaagggcattaaatccccaaattatttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctgacaatcc |
318 |
Q |
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| T |
7037013 |
tttcctagaagggcattaaatccccaaattatttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctgacaatcc |
7037112 |
T |
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| Q |
319 |
tgatttaataataaccatgcaaccaccgatggacaactgattattcttccaatttgacaatattaaacaaaccgcatctataactggttgccaggtagcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037113 |
tgatttaataataaccatgcaaccaccgatggacaactgattattcttccaatttgacaatattaaacaaaccgcatctataactggttgccaggtagcc |
7037212 |
T |
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| Q |
419 |
tatgatact |
427 |
Q |
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| T |
7037213 |
taagatact |
7037221 |
T |
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