View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_low_39 (Length: 431)

Name: NF6076_low_39
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_low_39
NF6076_low_39
[»] chr5 (2 HSPs)
chr5 (22-423)||(8181202-8181602)
chr5 (240-287)||(9260620-9260667)
[»] chr1 (5 HSPs)
chr1 (263-360)||(40980836-40980934)
chr1 (240-287)||(29394053-29394100)
chr1 (240-287)||(30402898-30402945)
chr1 (240-287)||(30409455-30409502)
chr1 (253-287)||(35163367-35163401)
[»] chr2 (1 HSPs)
chr2 (263-360)||(26450426-26450524)
[»] chr7 (2 HSPs)
chr7 (263-360)||(1972899-1972998)
chr7 (240-287)||(13947989-13948036)
[»] chr8 (2 HSPs)
chr8 (240-287)||(11144109-11144156)
chr8 (240-274)||(44552136-44552170)
[»] chr3 (1 HSPs)
chr3 (240-287)||(55040127-55040174)
[»] chr6 (1 HSPs)
chr6 (240-274)||(32446116-32446150)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 8181602 - 8181202
Alignment:
Q  22 ttcgttgcattgggtttcatgtattttactattgatatattgttcttctaggttcacttttgattctattgcgtgcagcaaattcttatagagattgaga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181602 ttcgttgcattgggtttcatgtattttactattgatatattgttcttctaggttcacttttgattctattgcgtgcagcaaattcttatagagattgaga 8181503  T
Q  122 gcggagagtaaaaattagagtcaagataattaaacaccatgaggtaattttatcttacgttttttagatatgtttttgatctatgatatttatttcatct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8181502 gcggagagtaaaaattagagtcaagataattaaacaccatgaggtaattttatctt-cgttttttagatatgtttttgatctatgatatttatttcatct 8181404  T
Q  222 aatatgattatcagtaacttatagggttctgatgttgtttatagctcactggtgtcctatttaatgtataccttagcctcatttttatgtggaatgatgc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181403 aatatgattatcagtaacttatagggttctgatgttgtttatagctcactggtgtcctatttaatgtataccttagcctcatttttatgtggaatgatgc 8181304  T
Q  322 agatctatagggggcgcctctttgtggttatttagaggtatactgctgttacgaggttttcctttcaatgctattttccctctgtatcgtgctattcttc 421  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8181303 agatctatagggggcgcctctttgtggttatttagaggtattctgctgttacgaggttttcctttcaatgctattttccctctgtgtcgtgctattcttc 8181204  T
Q  422 tc 423  Q
    ||    
T  8181203 tc 8181202  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 9260667 - 9260620
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9260667 ttataggatcctgatgttgtttatagctcactggtgtcctatttaatg 9260620  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 40980934 - 40980836
Alignment:
Q  263 tagctcactggtgtcctatttaatgtataccttagcctcat-ttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 360  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  40980934 tagctcactggtgtcctatttaatgtataccttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 40980836  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 29394100 - 29394053
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||||||||||||||||||| ||||||||| |||||||    
T  29394100 ttataggatcctgatgttgtttatagctcagtggtgtcctttttaatg 29394053  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 30402945 - 30402898
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30402945 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30402898  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 30409502 - 30409455
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30409502 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30409455  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 35163367 - 35163401
Alignment:
Q  253 atgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||||||||||||||||||||||| |||||||    
T  35163367 atgttgtttatagctcactggtgtcctttttaatg 35163401  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 26450426 - 26450524
Alignment:
Q  263 tagctcactggtgtcctatttaatgtataccttagcctcattttta-tgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 360  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  26450426 tagctcagtggtgtcctatttaatgtatactttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 26450524  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 1972899 - 1972998
Alignment:
Q  263 tagctcactggtgtcctatttaatgtataccttagcctca--tttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 360  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||| || ||| |||||||| ||||||| |||||||||| ||||    
T  1972899 tagctcactggtgtcctatttaatgtataccttagcctcatttttttgtgtggaaagatgtagttctttagggggcacctctttttggttatttaaaggt 1972998  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 13947989 - 13948036
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  13947989 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 13948036  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 11144109 - 11144156
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  11144109 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 11144156  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 44552136 - 44552170
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggt 274  Q
    ||||||||| |||||||||||||||||||||||||    
T  44552136 ttatagggtcctgatgttgtttatagctcactggt 44552170  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 55040174 - 55040127
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 287  Q
    ||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  55040174 ttataggatcctgacgttgtttatagctcactggtgtcctttttaatg 55040127  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 32446116 - 32446150
Alignment:
Q  240 ttatagggttctgatgttgtttatagctcactggt 274  Q
    |||||||||||||||||||||||||||| ||||||    
T  32446116 ttatagggttctgatgttgtttatagcttactggt 32446150  T

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