View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_40 (Length: 431)
Name: NF6076_low_40
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 5326251 - 5326652
Alignment:
| Q |
1 |
aatcttaatcacccttgccattatttgttatcaatatatgttccaaatgcaaattgtaaattgtaaatgaattgatttgttttgttattgaaaagaatgt |
100 |
Q |
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| T |
5326251 |
aatcttaatcacccttgccattatttgttatcaatatgt--------tgcaagttgtagattgtaaatgaat-gatttgttttgttattgaaaagaatgt |
5326341 |
T |
|
| Q |
101 |
gnnnnnnnnnnnnnnnnngatggtgctcgtaaatattatattacgtggggtatagtaaatggtaataacatatatatccttgttgttgccagattctaaa |
200 |
Q |
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| T |
5326342 |
gatatatttatatata--gatggtgctcgtaaatattatattacgtagggcatagtaaatggtaataacatatatatccttgttgttgccagattctaaa |
5326439 |
T |
|
| Q |
201 |
ttccaaattggattcgtgctacaattttaaattctccagttgcaatggcaaaagtatagtgttatannnnnnnataaagaaaagtatggtgttatttgtg |
300 |
Q |
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| T |
5326440 |
ttccaaattggattcgtgcttcaattttaaattacccggttgcaatggcaaaagtatagtgttatatttttttataaagaaaagtatggtgttatttgtg |
5326539 |
T |
|
| Q |
301 |
tgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacagtaattttaaggaatgaagacaacactaatggaggtgaagaataaaaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5326540 |
tgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacattaattttaaggaatgaagacaacactaatggaggtgaagaataaaaatt |
5326639 |
T |
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| Q |
401 |
aataccgccatga |
413 |
Q |
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| T |
5326640 |
aataccgccatga |
5326652 |
T |
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