View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_low_41 (Length: 421)
Name: NF6076_low_41
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3256060 - 3256242
Alignment:
| Q |
1 |
tcatcatagcagacctaaaaccacaatataaaatatta----tattttttattagtttcctataaataaaacctatgatcattagataccgctgctataa |
96 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256060 |
tcatcatagcagacctaaaacaacaatataaaatattaataatattttttattagtttcctataaataaaacctatgatcattagataccgctgctataa |
3256159 |
T |
|
| Q |
97 |
tttacttnnnnnnnttagctgcagaaataacaaatacctagttgtttgaagtgaatcatccaattattaaagcatgttggttt |
179 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256160 |
tttacttaaaaaaattagctgcagaaatcacaaatacctagttgtttgaagtgaatcatccaattattaaagcatgttggttt |
3256242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 3256358 - 3256453
Alignment:
| Q |
298 |
gtgtaacacatgcagaaattaacctcagctgtagaagaagtcgaaagaagcctctctttttcccttcttttcttcatcggcaaggcaaaaacccta |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256358 |
gtgtaacacatgcagaaattaacctcagctgtagaagaagtcgaaagaagcctctctttttcccttcttttcttcatcggcaaggcaaaaacccta |
3256453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University