View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_low_43 (Length: 418)
Name: NF6076_low_43
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 218 - 412
Target Start/End: Original strand, 41101265 - 41101459
Alignment:
| Q |
218 |
tagatagagattaatttctatgcactgacaagtaaaatatttgcatcatacggtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgta |
317 |
Q |
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| T |
41101265 |
tagatagagatcaatttctatgcactgacaagtaaaatatttgcatcatactgtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgta |
41101364 |
T |
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| Q |
318 |
tatgaattaaatccctaaagatatcattaagatttaaatttgaatatttgttagtgtatttataggataaagatatgtttttgaagtataattta |
412 |
Q |
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| T |
41101365 |
tatgaattaaatccctaaagatatcattaagatttaaatttgaatatttgttagtgtatttataggataaagatatgtttttgaattataattta |
41101459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 41101044 - 41101245
Alignment:
| Q |
16 |
caccatccaggtagctattgatttgtatgttgttgattctattctattctattttatcaatattatcaactcaaaacacacacacagtgcaaatagggaa |
115 |
Q |
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| T |
41101044 |
caccatccaggtagctattgatttgtatgttgttgattctatactattctattttatcaatattatcaactcaaaacacacacacac-----atagggaa |
41101138 |
T |
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| Q |
116 |
aatgatgattgatccatttcatgtaatcacttgatacaaagttacaaactactgttgttggtgagaatattaagcctaaatatcgtttttaagatttagg |
215 |
Q |
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| T |
41101139 |
aatgatgattgatccatttcatgtaatcacttgatacaaagttacaaactactgttgttggtgagaatattaagcctaaatatcgtttttaagatttagg |
41101238 |
T |
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| Q |
216 |
tttagat |
222 |
Q |
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| T |
41101239 |
tttagat |
41101245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 385
Target Start/End: Original strand, 41079693 - 41079819
Alignment:
| Q |
260 |
gcatcatacggtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgtatatgaattaaatccctaaagatatcattaagatttaaatttg |
359 |
Q |
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| T |
41079693 |
gcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatccttaaaggtatcattaagatttaaatttg |
41079792 |
T |
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| Q |
360 |
aata-tttgttagtgtatttataggat |
385 |
Q |
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|||| |||||||| |||||| |||||| |
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| T |
41079793 |
aatattttgttagagtatttttaggat |
41079819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 41079496 - 41079531
Alignment:
| Q |
113 |
gaaaatgatgattgatccatttcatgtaatcacttg |
148 |
Q |
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| T |
41079496 |
gaaaatgatgattgatacatttcatgtaatcacttg |
41079531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 41079547 - 41079593
Alignment:
| Q |
177 |
tgagaatattaagcctaaatatcgtttttaagatttaggtttagata |
223 |
Q |
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| T |
41079547 |
tgagaatattatgcctagatatcgttttttaggtttaggtttagata |
41079593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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